Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   ETA18_RS02465 Genome accession   NZ_CP035400
Coordinates   478708..479142 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain SRCM103835     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 473708..484142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA18_RS02435 (ETA18_02435) ydaD 474355..475215 (+) 861 WP_042977133.1 SDR family oxidoreductase -
  ETA18_RS02440 (ETA18_02440) lyxE 475231..475734 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  ETA18_RS02445 (ETA18_02445) ydaF 475822..476373 (+) 552 WP_128992419.1 GNAT family protein -
  ETA18_RS02450 (ETA18_02450) ydaG 476451..476873 (+) 423 WP_015252796.1 pyridoxamine 5'-phosphate oxidase family protein -
  ETA18_RS02455 (ETA18_02455) amj 477379..478188 (+) 810 WP_061891247.1 lipid II flippase Amj -
  ETA18_RS02460 (ETA18_02460) ydzA 478233..478523 (-) 291 WP_128992420.1 DUF3817 domain-containing protein -
  ETA18_RS02465 (ETA18_02465) lrpC 478708..479142 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  ETA18_RS02470 (ETA18_02470) topB 479207..481390 (+) 2184 WP_046160064.1 DNA topoisomerase III -
  ETA18_RS02475 (ETA18_02475) ephJ 481593..482681 (+) 1089 WP_128992421.1 lipoprotein YdaJ -
  ETA18_RS02480 (ETA18_02480) epsK 482662..483513 (+) 852 WP_003234384.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=299288 ETA18_RS02465 WP_003246585.1 478708..479142(+) (lrpC) [Bacillus subtilis strain SRCM103835]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=299288 ETA18_RS02465 WP_003246585.1 478708..479142(+) (lrpC) [Bacillus subtilis strain SRCM103835]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGGCAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTTGGGCTTCCCGTTTCCTGTATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCAGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment