Detailed information    

insolico Bioinformatically predicted

Overview


Name   ceuB   Type   Machinery gene
Locus tag   SPP_RS09235 Genome accession   NC_012467
Coordinates   1736416..1737375 (+) Length   319 a.a.
NCBI ID   WP_000777244.1    Uniprot ID   -
Organism   Streptococcus pneumoniae P1031     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1731416..1742375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPP_RS09205 (SPP_1863) - 1731615..1732379 (-) 765 WP_000082879.1 nuclear transport factor 2 family protein -
  SPP_RS09210 (SPP_1864) - 1732383..1732826 (-) 444 WP_000651443.1 MarR family winged helix-turn-helix transcriptional regulator -
  SPP_RS09215 (SPP_1865) - 1733508..1733804 (-) 297 WP_000840136.1 bacteriocin immunity protein -
  SPP_RS09220 (SPP_1866) pepA 1733826..1734890 (-) 1065 WP_000209206.1 glutamyl aminopeptidase -
  SPP_RS09225 (SPP_1868) galE 1735292..1735993 (+) 702 WP_000167850.1 UDP-glucose 4-epimerase GalE -
  SPP_RS13915 - 1736009..1736119 (+) 111 WP_001108391.1 hypothetical protein -
  SPP_RS09235 (SPP_1869) ceuB 1736416..1737375 (+) 960 WP_000777244.1 ABC transporter permease Machinery gene
  SPP_RS09240 (SPP_1870) - 1737365..1738321 (+) 957 WP_001193668.1 iron chelate uptake ABC transporter family permease subunit -
  SPP_RS09245 (SPP_1871) - 1738318..1739070 (+) 753 WP_000764304.1 ABC transporter ATP-binding protein -
  SPP_RS09250 (SPP_1872) - 1739166..1740131 (+) 966 WP_000858260.1 siderophore ABC transporter substrate-binding protein -
  SPP_RS09255 (SPP_1873) yidD 1740356..1740598 (-) 243 WP_000821643.1 membrane protein insertion efficiency factor YidD -
  SPP_RS09260 (SPP_1874) - 1740598..1741320 (-) 723 WP_001222225.1 pseudouridine synthase -
  SPP_RS09265 (SPP_1875) scpB 1741307..1741876 (-) 570 WP_000105310.1 SMC-Scp complex subunit ScpB -

Sequence


Protein


Download         Length: 319 a.a.        Molecular weight: 35388.27 Da        Isoelectric Point: 9.7465

>NTDB_id=29924 SPP_RS09235 WP_000777244.1 1736416..1737375(+) (ceuB) [Streptococcus pneumoniae P1031]
MKLSHYLIGLLLLLVFLSISIGTSDFSWGKLFDFDQQTWLLFQESRLPRTISILLTASSMSMAGLLMQTITQNQFAAPST
VGTTEAAKLGMVLSLFVFPSASLTQKMLFAFVSSIVFTLFFLAFMTIFTVKERWMLPLIGIIYSGIIGSVTEVIAYRFNL
VQSMTAWTQGSFSMIQTHQYEWLFLGLIILITVWKLSQTFTIMNLGKETSEGLGISYSLLEKLALFLVALTTSVTMITVG
GLPFLGVIVPNLVRKRYGDNLSQTKLMVALVGANLVLACDILSRVLIRPYELSVSLLLGIIGSLVFILLLWRGGRKDAD

Nucleotide


Download         Length: 960 bp        

>NTDB_id=29924 SPP_RS09235 WP_000777244.1 1736416..1737375(+) (ceuB) [Streptococcus pneumoniae P1031]
ATGAAACTTTCTCATTATTTAATTGGCTTACTTCTACTCCTAGTCTTTCTCTCTATTAGCATTGGGACCAGTGATTTTTC
ATGGGGAAAGCTATTTGATTTCGACCAGCAGACCTGGCTCCTCTTTCAAGAGTCCCGTCTCCCAAGAACTATCAGTATTC
TCCTGACTGCCTCTAGTATGAGTATGGCAGGCCTTCTCATGCAGACTATTACCCAAAATCAGTTTGCTGCACCGAGTACA
GTTGGAACGACTGAAGCCGCCAAACTGGGAATGGTGCTGAGCCTTTTTGTCTTTCCATCGGCTAGTCTGACCCAAAAGAT
GCTCTTCGCTTTTGTTTCATCCATCGTATTCACCCTCTTCTTCCTAGCCTTTATGACCATTTTTACTGTAAAGGAAAGGT
GGATGTTGCCTCTGATTGGGATCATCTATAGCGGGATTATCGGCTCAGTCACAGAAGTTATCGCCTATCGTTTCAATCTG
GTTCAGAGTATGACTGCCTGGACCCAGGGCTCCTTCTCCATGATTCAGACCCATCAGTATGAGTGGCTCTTCTTAGGCCT
CATCATCCTGATAACCGTTTGGAAATTATCCCAAACCTTCACCATCATGAATCTGGGGAAAGAAACCAGCGAGGGTTTGG
GGATTTCCTACTCCCTACTTGAAAAACTGGCCCTCTTTCTGGTGGCGCTAACGACAAGCGTCACCATGATTACCGTGGGT
GGCTTACCATTTCTCGGAGTTATCGTTCCCAATCTTGTTCGCAAGCGCTATGGAGATAATCTAAGTCAAACCAAACTCAT
GGTCGCACTGGTTGGTGCCAATCTAGTTCTGGCTTGCGATATCCTATCCCGAGTTCTGATTAGGCCCTATGAGTTGTCTG
TCAGTCTCTTGCTAGGAATCATCGGTAGTCTCGTCTTTATCCTACTTCTCTGGAGAGGGGGACGAAAAGATGCAGACTAA

Domains


Predicted by InterProScan.

(10-312)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

37.419

97.179

0.364


Multiple sequence alignment