Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HME9304_RS05915 Genome accession   NZ_CP030104
Coordinates   1342144..1343505 (+) Length   453 a.a.
NCBI ID   WP_112377702.1    Uniprot ID   A0A2Z4LR27
Organism   Flagellimonas maritima strain HME9304     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1337144..1348505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HME9304_RS05890 (HME9304_01204) - 1337573..1338382 (-) 810 WP_112379742.1 glycogen/starch synthase -
  HME9304_RS05895 (HME9304_01205) panC 1338485..1339333 (+) 849 WP_112377698.1 pantoate--beta-alanine ligase -
  HME9304_RS05900 (HME9304_01206) panD 1339347..1339697 (+) 351 WP_112377699.1 aspartate 1-decarboxylase -
  HME9304_RS05905 (HME9304_01207) - 1339699..1340664 (+) 966 WP_112377700.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  HME9304_RS05910 (HME9304_01208) - 1340692..1341834 (+) 1143 WP_112377701.1 alpha/beta hydrolase -
  HME9304_RS16905 - 1341965..1342129 (-) 165 WP_164674777.1 hypothetical protein -
  HME9304_RS05915 (HME9304_01209) radA 1342144..1343505 (+) 1362 WP_112377702.1 DNA repair protein RadA Machinery gene
  HME9304_RS05920 (HME9304_01210) - 1343675..1344715 (-) 1041 WP_112377703.1 aldo/keto reductase -
  HME9304_RS05925 (HME9304_01211) - 1344778..1345542 (-) 765 WP_112379743.1 exodeoxyribonuclease III -
  HME9304_RS05930 (HME9304_01212) - 1345671..1346186 (+) 516 WP_112377704.1 hypothetical protein -
  HME9304_RS05935 (HME9304_01213) - 1346215..1346769 (+) 555 WP_112377705.1 cysteine hydrolase family protein -
  HME9304_RS05940 (HME9304_01214) - 1347100..1348167 (+) 1068 WP_206170500.1 Gfo/Idh/MocA family protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49663.25 Da        Isoelectric Point: 7.8818

>NTDB_id=299209 HME9304_RS05915 WP_112377702.1 1342144..1343505(+) (radA) [Flagellimonas maritima strain HME9304]
MAKTKTAFFCQNCGAQYPKWTGQCSSCKQWNTIVEEVVQKEDKKGWKNTTSSAKKAPKPLKISEITNEREIRMDTRDQEF
NRVLGGGIVPGSLILLGGEPGIGKSTLLLQIALKLPYKTLYVSGEESQKQIKMRADRIHPDSESCYILTETKTQNIFQQI
GALEPDLVVIDSIQTLHTDYIESAAGSISQIRECTAELIKFAKESNTPVVLVGHITKDGTIAGPKILEHMVDTVLQFEGD
RNYVYRILRSLKNRFGSTAELGIYEMQGSGLREVNNPSEVLISKNEEDLSGTAIAATVEGMRPLLIEIQALVSTAVYGTP
QRSATGFNAKRLNMLLAVLEKRAGFKLGAKDVFLNITGGISVDDPAIDLAVVAAILSSNADIPIEKGTCFAAEVGLAGEI
RPVQRVDQRILEAEKLGFTTIYVSKSNKIGIKNTSIRLRLVSKIEDVVNVLFI

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=299209 HME9304_RS05915 WP_112377702.1 1342144..1343505(+) (radA) [Flagellimonas maritima strain HME9304]
ATGGCAAAGACCAAGACAGCTTTTTTCTGCCAAAATTGTGGTGCACAATACCCAAAATGGACAGGGCAATGTTCTTCTTG
CAAACAATGGAATACGATTGTTGAGGAAGTAGTCCAAAAAGAGGATAAAAAAGGTTGGAAAAACACTACAAGTTCTGCCA
AGAAAGCTCCAAAACCTCTAAAAATATCCGAAATAACCAATGAGCGTGAAATCCGAATGGATACAAGGGACCAAGAGTTC
AATAGGGTCTTGGGTGGAGGTATTGTTCCTGGCTCATTGATTTTATTGGGAGGAGAACCCGGTATTGGAAAAAGTACGTT
GCTTTTGCAAATTGCTTTGAAACTTCCCTACAAAACACTCTACGTTTCCGGTGAGGAAAGTCAAAAACAGATAAAAATGC
GGGCAGATCGAATTCATCCCGATAGTGAAAGTTGCTATATCCTTACCGAGACCAAAACACAAAATATTTTCCAACAAATC
GGTGCTTTGGAACCGGATTTAGTGGTTATCGACTCCATACAAACTTTACATACTGATTATATTGAATCTGCTGCAGGCAG
TATATCACAAATACGAGAGTGTACGGCCGAGCTAATCAAATTTGCCAAAGAAAGCAATACTCCCGTTGTTTTGGTCGGTC
ATATCACCAAAGATGGAACCATTGCCGGACCAAAGATTTTAGAACATATGGTGGATACCGTTCTTCAATTTGAAGGGGAT
AGAAATTATGTATACCGGATTCTTCGCTCTCTTAAAAACAGGTTTGGTTCTACTGCAGAATTGGGAATTTATGAAATGCA
GGGAAGCGGATTGCGCGAAGTGAACAATCCATCTGAAGTACTCATTTCTAAAAATGAAGAAGATCTTAGTGGTACGGCAA
TTGCAGCAACCGTTGAAGGCATGCGACCATTGTTGATTGAAATTCAGGCCTTGGTAAGCACGGCAGTCTATGGAACTCCG
CAACGCTCTGCAACGGGCTTTAATGCCAAACGCCTGAATATGCTTTTGGCCGTTCTTGAAAAAAGGGCAGGCTTTAAGTT
GGGAGCAAAAGACGTGTTCCTAAATATTACAGGTGGAATTTCTGTTGATGATCCCGCTATTGATTTAGCTGTGGTTGCGG
CCATATTGTCCAGCAATGCAGATATTCCCATAGAAAAGGGGACCTGTTTTGCCGCAGAGGTAGGACTTGCGGGAGAAATA
CGGCCGGTGCAGCGGGTAGATCAGCGTATTCTTGAAGCCGAAAAATTGGGATTTACTACAATCTATGTGTCCAAAAGCAA
TAAAATTGGTATTAAAAACACCTCCATTCGGTTACGGTTGGTATCAAAGATTGAGGATGTGGTCAATGTCCTGTTCATTT
GA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(327-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

AAA domain (AAA_25)

(66-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z4LR27

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

49.231

100

0.494
  radA Streptococcus pneumoniae Rx1

49.231

100

0.494
  radA Streptococcus pneumoniae D39

49.231

100

0.494
  radA Streptococcus mitis NCTC 12261

49.231

100

0.494
  radA Streptococcus pneumoniae TIGR4

49.231

100

0.494
  radA Streptococcus mitis SK321

49.231

100

0.494
  radA Bacillus subtilis subsp. subtilis str. 168

50.93

94.923

0.483

Multiple sequence alignment