Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RK57_RS08825 Genome accession   NZ_CP030101
Coordinates   1796805..1798178 (+) Length   457 a.a.
NCBI ID   WP_050896842.1    Uniprot ID   -
Organism   Listeria monocytogenes strain FDAARGOS_57     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1791805..1803178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RK57_RS08805 (RK57_08935) - 1792159..1792617 (+) 459 WP_003726421.1 CtsR family transcriptional regulator -
  RK57_RS08810 (RK57_08940) - 1792630..1793148 (+) 519 WP_031644028.1 UvrB/UvrC motif-containing protein -
  RK57_RS08815 (RK57_08945) - 1793145..1794167 (+) 1023 WP_031644030.1 protein arginine kinase -
  RK57_RS08820 (RK57_08950) - 1794196..1796658 (+) 2463 WP_003726424.1 ATP-dependent Clp protease ATP-binding subunit -
  RK57_RS08825 (RK57_08955) radA 1796805..1798178 (+) 1374 WP_050896842.1 DNA repair protein RadA Machinery gene
  RK57_RS08830 (RK57_08960) - 1798311..1799384 (+) 1074 WP_003726425.1 PIN/TRAM domain-containing protein -
  RK57_RS08835 (RK57_08965) ispD 1799404..1800102 (+) 699 WP_003728084.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  RK57_RS08840 (RK57_08970) ispF 1800095..1800568 (+) 474 WP_003728083.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  RK57_RS08845 (RK57_08975) gltX 1800587..1802062 (+) 1476 WP_003728082.1 glutamate--tRNA ligase -
  RK57_RS08850 (RK57_08980) epsC 1802462..1803076 (+) 615 WP_003726845.1 serine O-acetyltransferase EpsC -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49963.57 Da        Isoelectric Point: 7.9613

>NTDB_id=299197 RK57_RS08825 WP_050896842.1 1796805..1798178(+) (radA) [Listeria monocytogenes strain FDAARGOS_57]
MAKAKRTTKFVCQACGYESAKWMGKCPNCNEWNQMVEALEPSKKSRSAFNHTGEPSKATPITQIASETEKRVETNMPELN
RVLGGGVVPGSMVLVGGDPGIGKSTLLLQVSAQLTLTNKKVLYISGEESIKQTKLRAERLQVSGDNLYVYAETNLEAVQE
TIDFVKPDFVVIDSIQTVYHPDVTSAAGSVSQVRECTATLMRIAKMQNIAIFIVGHVTKEGAIAGPRLLEHMVDTVLYFE
GERHHAYRILRAVKNRFGSTNEMGIFEMRDVGLVEVANPSEVFLEERLEGASGSTVVASMEGTRPVLVEIQALVSPTMFG
NAKRMATGIDYNKVSLIMAVLEKRVGLMLQNQDAYLKAAGGVKLDEPAVDLAVAVSVASSYRDKPTRSTDCFIGELGLTG
EIRRVARIEQRVQEAAKLGFKRIFIPKNNEGNWKIPKDVQAVGVETIGEALKKALPD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=299197 RK57_RS08825 WP_050896842.1 1796805..1798178(+) (radA) [Listeria monocytogenes strain FDAARGOS_57]
ATGGCTAAAGCAAAAAGGACAACCAAATTTGTGTGTCAGGCATGTGGATATGAATCGGCAAAATGGATGGGAAAATGTCC
GAATTGCAACGAGTGGAATCAGATGGTAGAAGCTTTGGAGCCGTCAAAAAAATCACGCTCAGCTTTTAATCATACGGGAG
AACCTTCGAAAGCGACTCCAATTACTCAAATAGCAAGTGAAACAGAAAAACGTGTCGAAACCAATATGCCGGAGTTAAAT
AGAGTTCTTGGCGGAGGTGTGGTTCCAGGATCTATGGTACTTGTCGGTGGGGATCCTGGTATCGGGAAGTCGACTTTATT
ACTGCAAGTTTCAGCTCAACTGACGCTCACAAATAAAAAAGTATTGTATATATCAGGAGAAGAATCTATCAAACAAACGA
AGCTGCGGGCGGAACGCTTGCAAGTTTCGGGAGATAATTTATATGTGTATGCAGAAACAAATTTAGAAGCAGTTCAAGAA
ACGATTGATTTTGTGAAGCCTGATTTTGTAGTCATTGACTCCATTCAGACTGTTTATCATCCCGATGTTACAAGTGCAGC
GGGGAGTGTTTCGCAAGTTAGGGAATGTACAGCGACATTGATGCGAATTGCTAAAATGCAAAACATTGCAATCTTTATTG
TTGGACATGTAACAAAGGAAGGTGCTATTGCGGGGCCGCGCCTACTTGAACATATGGTTGATACTGTGCTTTATTTTGAA
GGGGAGCGTCATCATGCTTACCGGATTTTGCGTGCAGTGAAAAACCGTTTTGGTTCCACTAATGAAATGGGTATATTTGA
AATGCGAGATGTTGGACTTGTAGAAGTTGCTAATCCTTCCGAAGTGTTCTTGGAAGAACGTCTTGAAGGCGCTTCAGGTT
CAACGGTTGTAGCTTCTATGGAAGGAACTCGCCCCGTCCTTGTGGAAATACAAGCGCTTGTTTCGCCTACGATGTTTGGT
AATGCTAAGCGAATGGCGACAGGAATAGACTATAATAAAGTTTCGCTAATTATGGCTGTTTTAGAAAAGCGAGTAGGTTT
AATGTTGCAAAACCAAGATGCTTATTTGAAAGCAGCTGGTGGGGTTAAATTGGATGAACCTGCAGTGGATTTGGCGGTTG
CAGTCAGTGTTGCATCTAGCTATCGTGATAAACCAACAAGAAGTACGGATTGCTTTATTGGAGAACTTGGACTTACAGGT
GAGATTCGTCGTGTTGCAAGAATTGAACAACGCGTACAAGAAGCCGCAAAACTTGGCTTTAAGCGAATTTTTATTCCTAA
AAATAACGAAGGTAATTGGAAAATACCGAAAGACGTGCAAGCGGTTGGGGTGGAAACGATTGGAGAAGCTTTGAAGAAAG
CTTTACCAGATTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(64-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

Subunit ChlI of Mg-chelatase (ChlI)

(363-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

68.202

99.781

0.681
  radA Streptococcus pneumoniae Rx1

65.044

98.906

0.643
  radA Streptococcus pneumoniae D39

65.044

98.906

0.643
  radA Streptococcus pneumoniae R6

65.044

98.906

0.643
  radA Streptococcus pneumoniae TIGR4

65.044

98.906

0.643
  radA Streptococcus mitis NCTC 12261

65.044

98.906

0.643
  radA Streptococcus mitis SK321

64.823

98.906

0.641

Multiple sequence alignment