Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   ETA10_RS10580 Genome accession   NZ_CP035397
Coordinates   1998134..1999909 (-) Length   591 a.a.
NCBI ID   WP_048655128.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103773     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1993134..2004909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA10_RS10560 (ETA10_10560) desE 1993511..1994569 (+) 1059 WP_021481458.1 fatty acid desaturase DesE -
  ETA10_RS10565 (ETA10_10565) desK 1994689..1995801 (+) 1113 WP_014480016.1 two-component sensor histidine kinase DesK -
  ETA10_RS10570 (ETA10_10570) desR 1995820..1996419 (+) 600 WP_004399356.1 two-component system response regulator DesR -
  ETA10_RS10575 (ETA10_10575) walN 1997024..1997887 (-) 864 WP_003231267.1 3D domain-containing protein -
  ETA10_RS10580 (ETA10_10580) recQ 1998134..1999909 (-) 1776 WP_048655128.1 DNA helicase RecQ Machinery gene
  ETA10_RS10595 (ETA10_10595) azoJ 2000474..2001100 (-) 627 WP_015251906.1 FMN-dependent NADH-azoreductase AzoJ -
  ETA10_RS10600 (ETA10_10600) stpP 2001251..2001742 (-) 492 WP_044052512.1 TraR/DksA family transcriptional regulator -
  ETA10_RS10605 (ETA10_10605) - 2001817..2002149 (-) 333 WP_014480020.1 hypothetical protein -
  ETA10_RS10610 (ETA10_10610) - 2002227..2002454 (+) 228 WP_014480021.1 hypothetical protein -
  ETA10_RS10615 (ETA10_10615) yocM 2002441..2002917 (-) 477 WP_014477071.1 salt stress-responsive protein YocM -
  ETA10_RS10620 (ETA10_10620) - 2002984..2003247 (+) 264 WP_004399338.1 hypothetical protein -
  ETA10_RS10625 (ETA10_10625) - 2003252..2003485 (+) 234 WP_003231251.1 hypothetical protein -
  ETA10_RS10630 (ETA10_10630) yozO 2003578..2003922 (-) 345 WP_003220141.1 PH domain-containing protein -
  ETA10_RS10635 (ETA10_10635) yozC 2004279..2004482 (-) 204 WP_003231245.1 DUF6501 family protein -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 67340.82 Da        Isoelectric Point: 6.2902

>NTDB_id=299193 ETA10_RS10580 WP_048655128.1 1998134..1999909(-) (recQ) [Bacillus subtilis strain SRCM103773]
MLHRAQSLLAHYFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSVCYQIPALMFEGTTIVISPLISLMKDQVDALEE
AGINAAYINSTQSNQEIYERLNGLKEGAYKLFYITPERLTSTEFIRILQGIDVPLVAIDEAHCISQWGHDFRPSYRNIEI
LFRELHDKPVIMALTATATPEVHDDICKQLHIQKENTVYTGFTRENLTFKVVKGENKDRFIDEYVQNNRHEAGIVYTATR
KEADRIYERLKRNQVRAGRYHGGLADDVRKEQQERFLNDELQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGR
AGRDGLASECVLLFSPQDIMVQRFLIEQSEHEEKQKQDLKKLRQMVDYCHTEDCLQRFILMYFGEKEPDACGQCGNCTDT
RAAHDVTREAQMVLSCIIRMKERFGKTMVAQVLAGSKNKKVLENGFSDLSTYGILKHQSVGEISDFIEFLISDDFIRMSD
GTFPTLFVSSKGRNVLKGELSVARKEALKAAAITENDELFERLRMVRKEIAAEQGVPPFVVFSDQTLKEMSGKQPVNDDE
LLSIKGVGEQKRAKYGRLFLQEIQAYARMTD

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=299193 ETA10_RS10580 WP_048655128.1 1998134..1999909(-) (recQ) [Bacillus subtilis strain SRCM103773]
ATGTTACATAGAGCCCAATCCCTTCTGGCTCATTATTTTGGTTATGAGAAGTTTCGGAGCGGCCAAGATGAAGCGATCCG
CTTGGTGACGGAAGCGAGGCAAAATACGGCCTGCATTATGCCGACGGGAGGCGGCAAATCGGTTTGCTATCAGATTCCGG
CATTAATGTTTGAAGGGACGACGATCGTCATTTCACCGTTGATTTCCTTGATGAAGGATCAAGTTGATGCGTTAGAAGAA
GCGGGGATTAACGCCGCCTACATTAACAGCACACAATCCAATCAGGAAATATATGAGAGGCTGAACGGACTCAAAGAAGG
AGCTTATAAGCTTTTTTACATTACACCAGAGCGACTAACGTCCACAGAGTTTATCCGGATTTTGCAGGGGATAGATGTTC
CTTTGGTCGCAATAGACGAGGCGCACTGTATTTCTCAATGGGGCCATGATTTCAGGCCAAGCTACAGGAATATTGAAATC
TTGTTCCGTGAATTACACGACAAGCCTGTCATCATGGCGTTAACAGCAACAGCCACACCCGAGGTTCATGATGATATTTG
CAAACAGCTGCATATTCAAAAAGAAAACACGGTATATACCGGATTTACCCGAGAGAATTTAACCTTTAAAGTAGTAAAAG
GAGAAAATAAAGATCGGTTTATAGACGAATATGTGCAAAACAACAGGCATGAAGCAGGAATTGTCTATACCGCGACCAGA
AAAGAAGCTGATCGGATATATGAGAGATTGAAACGAAATCAAGTCAGGGCAGGTCGGTATCACGGAGGTTTGGCTGATGA
TGTGAGAAAAGAGCAGCAGGAAAGGTTTCTTAATGATGAGCTTCAAGTGATGGTGGCAACCTCTGCTTTTGGAATGGGTA
TTGATAAATCAAATATCAGATTTGTTCTGCATGCACAAATTCCGAAAGATATGGAAAGCTATTATCAAGAGGCAGGACGA
GCTGGACGGGACGGTCTTGCCAGTGAATGTGTTCTCCTGTTTTCACCGCAGGATATTATGGTACAGCGCTTCTTAATTGA
GCAATCAGAACATGAAGAGAAACAAAAGCAGGATTTAAAAAAGCTGAGACAAATGGTCGACTACTGCCATACGGAAGATT
GTCTGCAGCGTTTTATCCTTATGTATTTCGGAGAAAAGGAGCCTGATGCGTGCGGACAGTGCGGAAACTGTACCGATACA
AGAGCGGCCCATGACGTGACGCGGGAGGCGCAAATGGTCTTATCTTGTATCATTCGCATGAAAGAACGGTTTGGCAAGAC
GATGGTTGCACAGGTGCTTGCCGGCTCCAAAAATAAAAAAGTTCTTGAAAACGGCTTTTCCGACCTTTCAACATACGGGA
TATTAAAACACCAATCCGTTGGCGAAATCAGTGATTTTATCGAATTTCTTATTTCTGACGACTTCATCAGGATGTCAGAC
GGAACGTTTCCGACTCTTTTTGTCAGCAGTAAAGGAAGGAATGTGCTGAAAGGAGAATTATCAGTAGCGAGAAAAGAAGC
GTTAAAAGCGGCAGCGATTACTGAAAATGACGAGCTATTTGAACGATTGCGCATGGTTCGGAAAGAAATTGCTGCTGAGC
AGGGTGTTCCGCCATTTGTTGTTTTCTCTGACCAAACGTTAAAAGAAATGTCAGGAAAACAGCCCGTAAATGATGATGAA
CTTTTGTCTATAAAAGGAGTCGGAGAACAAAAAAGAGCAAAATACGGCCGGCTTTTTTTACAAGAAATACAAGCTTATGC
AAGGATGACAGACTAA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(21-182)

RecQ zinc-binding (RecQ_Zn_bind)

(336-398)

Helicase conserved C-terminal domain (Helicase_C)

(218-324)

RQC domain (RQC)

(403-507)

HRDC domain (HRDC)

(518-583)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

99.492

100

0.995