Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   ETA10_RS09255 Genome accession   NZ_CP035397
Coordinates   1764589..1765020 (+) Length   143 a.a.
NCBI ID   WP_128753581.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103773     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1759589..1770020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA10_RS09235 (ETA10_09235) spoVS 1760149..1760409 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  ETA10_RS09240 (ETA10_09240) tdh 1760676..1761719 (+) 1044 WP_015252072.1 L-threonine 3-dehydrogenase -
  ETA10_RS09245 (ETA10_09245) kbl 1761732..1762910 (+) 1179 WP_015252071.1 glycine C-acetyltransferase -
  ETA10_RS09250 (ETA10_09250) miaB 1763058..1764587 (+) 1530 WP_014479820.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  ETA10_RS09255 (ETA10_09255) ymcA 1764589..1765020 (+) 432 WP_128753581.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  ETA10_RS09260 (ETA10_09260) cotE 1765282..1765827 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  ETA10_RS09265 (ETA10_09265) hexA 1765960..1768536 (+) 2577 WP_046160418.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.32 Da        Isoelectric Point: 5.2978

>NTDB_id=299187 ETA10_RS09255 WP_128753581.1 1764589..1765020(+) (ymcA) [Bacillus subtilis strain SRCM103773]
MTLYSKKDIVKQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=299187 ETA10_RS09255 WP_128753581.1 1764589..1765020(+) (ymcA) [Bacillus subtilis strain SRCM103773]
ATGACGCTCTACTCAAAAAAAGACATTGTGAAGCAGGCACGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

99.301

100

0.993