Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   ETA10_RS08240 Genome accession   NZ_CP035397
Coordinates   1558637..1559086 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain SRCM103773     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1553637..1564086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA10_RS08200 (ETA10_08200) ctaE 1553654..1554277 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  ETA10_RS08205 (ETA10_08205) ctaF 1554280..1554612 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  ETA10_RS08210 (ETA10_08210) ctaG 1554640..1555533 (+) 894 WP_015715837.1 cytochrome c oxidase assembly factor CtaG -
  ETA10_RS08215 (ETA10_08215) ylbA 1555565..1555927 (-) 363 WP_003232238.1 YugN family protein -
  ETA10_RS08220 (ETA10_08220) ylbB 1556067..1556513 (+) 447 WP_046160383.1 CBS domain-containing protein -
  ETA10_RS08225 (ETA10_08225) ylbC 1556597..1557637 (+) 1041 WP_014479713.1 CAP domain-containing protein -
  ETA10_RS08230 (ETA10_08230) ylbD 1557868..1558266 (+) 399 WP_046160384.1 YlbD family protein -
  ETA10_RS08235 (ETA10_08235) ylbE 1558282..1558521 (+) 240 WP_003232231.1 YlbE-like family protein -
  ETA10_RS08240 (ETA10_08240) ylbF 1558637..1559086 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  ETA10_RS08245 (ETA10_08245) ylbG 1559141..1559413 (+) 273 WP_009967171.1 YlbG family protein -
  ETA10_RS08250 (ETA10_08250) rsmD 1559736..1560290 (+) 555 WP_033881642.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ETA10_RS08255 (ETA10_08255) coaD 1560295..1560780 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  ETA10_RS08260 (ETA10_08260) spoVV 1560791..1562017 (-) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  ETA10_RS08265 (ETA10_08265) ylbK 1562198..1562980 (+) 783 WP_003232221.1 patatin family protein -
  ETA10_RS08270 (ETA10_08270) sepM 1562982..1564007 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=299175 ETA10_RS08240 WP_003221370.1 1558637..1559086(+) (ylbF) [Bacillus subtilis strain SRCM103773]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=299175 ETA10_RS08240 WP_003221370.1 1558637..1559086(+) (ylbF) [Bacillus subtilis strain SRCM103773]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1