Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   ETA10_RS08270 Genome accession   NZ_CP035397
Coordinates   1562982..1564007 (+) Length   341 a.a.
NCBI ID   WP_003245451.1    Uniprot ID   O34470
Organism   Bacillus subtilis strain SRCM103773     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1557982..1569007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA10_RS08235 (ETA10_08235) ylbE 1558282..1558521 (+) 240 WP_003232231.1 YlbE-like family protein -
  ETA10_RS08240 (ETA10_08240) ylbF 1558637..1559086 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  ETA10_RS08245 (ETA10_08245) ylbG 1559141..1559413 (+) 273 WP_009967171.1 YlbG family protein -
  ETA10_RS08250 (ETA10_08250) rsmD 1559736..1560290 (+) 555 WP_033881642.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ETA10_RS08255 (ETA10_08255) coaD 1560295..1560780 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  ETA10_RS08260 (ETA10_08260) spoVV 1560791..1562017 (-) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  ETA10_RS08265 (ETA10_08265) ylbK 1562198..1562980 (+) 783 WP_003232221.1 patatin family protein -
  ETA10_RS08270 (ETA10_08270) sepM 1562982..1564007 (+) 1026 WP_003245451.1 protease DdcP Regulator
  ETA10_RS08275 (ETA10_08275) tmcAL 1564024..1565271 (-) 1248 WP_014479717.1 nucleotidyltransferase -
  ETA10_RS08280 (ETA10_08280) - 1565268..1565453 (-) 186 WP_003232215.1 hypothetical protein -
  ETA10_RS08285 (ETA10_08285) ylbN 1565481..1565999 (+) 519 WP_014479718.1 DUF177 domain-containing protein -
  ETA10_RS08290 (ETA10_08290) rpmF 1566021..1566200 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  ETA10_RS08295 (ETA10_08295) gerR 1566346..1566927 (+) 582 WP_014479720.1 sporulation specific transcriptional regulator GerR -
  ETA10_RS08300 (ETA10_08300) ylbP 1566984..1567466 (-) 483 WP_014476736.1 N-acetyltransferase -
  ETA10_RS08305 (ETA10_08305) panEA 1567626..1568522 (+) 897 WP_014479721.1 2-dehydropantoate 2-reductase -

Sequence


Protein


Download         Length: 341 a.a.        Molecular weight: 37651.23 Da        Isoelectric Point: 6.5347

>NTDB_id=299176 ETA10_RS08270 WP_003245451.1 1562982..1564007(+) (sepM) [Bacillus subtilis strain SRCM103773]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=299176 ETA10_RS08270 WP_003245451.1 1562982..1564007(+) (sepM) [Bacillus subtilis strain SRCM103773]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCGTTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CTGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTAATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATTGAAAATATTGGCGGTCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
TGGGAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  PDB 2KJP

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.402