Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   DOU34_RS18740 Genome accession   NZ_CP030097
Coordinates   3761445..3761735 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SH-B74     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3756445..3766735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOU34_RS18700 darA 3756462..3756791 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  DOU34_RS18705 - 3756804..3757244 (+) 441 WP_004264730.1 DUF327 family protein -
  DOU34_RS18710 holB 3757256..3758245 (+) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  DOU34_RS18715 ricT 3758248..3759075 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  DOU34_RS18720 yabA 3759090..3759449 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  DOU34_RS18725 - 3759510..3760253 (+) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  DOU34_RS18730 - 3760240..3760539 (+) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  DOU34_RS18735 rsmI 3760514..3761395 (+) 882 WP_020953847.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  DOU34_RS18740 abrB 3761445..3761735 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  DOU34_RS18745 metG 3762219..3764210 (+) 1992 WP_020955208.1 methionine--tRNA ligase -
  DOU34_RS18750 - 3764286..3765053 (+) 768 WP_032868379.1 TatD family hydrolase -
  DOU34_RS18755 - 3765188..3766513 (+) 1326 WP_023356663.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=299156 DOU34_RS18740 WP_169510469.1 3761445..3761735(-) (abrB) [Bacillus amyloliquefaciens strain SH-B74]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=299156 DOU34_RS18740 WP_169510469.1 3761445..3761735(-) (abrB) [Bacillus amyloliquefaciens strain SH-B74]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment