Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   ETA10_RS02450 Genome accession   NZ_CP035397
Coordinates   474335..474769 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain SRCM103773     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 469335..479769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA10_RS02420 (ETA10_02420) ydaD 469983..470843 (+) 861 WP_003246648.1 SDR family oxidoreductase -
  ETA10_RS02425 (ETA10_02425) lyxE 470859..471362 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  ETA10_RS02430 (ETA10_02430) ydaF 471450..472001 (+) 552 WP_014478866.1 GNAT family protein -
  ETA10_RS02435 (ETA10_02435) ydaG 472079..472501 (+) 423 WP_014478867.1 pyridoxamine 5'-phosphate oxidase family protein -
  ETA10_RS02440 (ETA10_02440) amj 473007..473816 (+) 810 WP_014478868.1 lipid II flippase Amj -
  ETA10_RS02445 (ETA10_02445) ydzA 473861..474151 (-) 291 WP_129110444.1 DUF3817 domain-containing protein -
  ETA10_RS02450 (ETA10_02450) lrpC 474335..474769 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  ETA10_RS02455 (ETA10_02455) topB 474834..477017 (+) 2184 WP_046160064.1 DNA topoisomerase III -
  ETA10_RS02460 (ETA10_02460) ephJ 477220..478308 (+) 1089 WP_129110445.1 lipoprotein YdaJ -
  ETA10_RS02465 (ETA10_02465) epsK 478289..479140 (+) 852 WP_129110446.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=299136 ETA10_RS02450 WP_003246585.1 474335..474769(+) (lrpC) [Bacillus subtilis strain SRCM103773]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=299136 ETA10_RS02450 WP_003246585.1 474335..474769(+) (lrpC) [Bacillus subtilis strain SRCM103773]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATTAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1