Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   DOU34_RS11915 Genome accession   NZ_CP030097
Coordinates   2441377..2442129 (-) Length   250 a.a.
NCBI ID   WP_061046585.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SH-B74     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2436377..2447129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOU34_RS11890 mreC 2436813..2437676 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  DOU34_RS11895 mreB 2437707..2438720 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  DOU34_RS11900 radC 2438812..2439507 (-) 696 WP_007408165.1 DNA repair protein RadC -
  DOU34_RS11905 - 2439539..2440108 (-) 570 WP_007408164.1 Maf family protein -
  DOU34_RS11910 - 2440249..2441250 (-) 1002 WP_061046586.1 SPOR domain-containing protein -
  DOU34_RS11915 comC 2441377..2442129 (-) 753 WP_061046585.1 A24 family peptidase Machinery gene
  DOU34_RS11920 - 2442269..2443561 (-) 1293 WP_007408161.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  DOU34_RS11925 - 2443620..2446262 (-) 2643 WP_044801613.1 valine--tRNA ligase -
  DOU34_RS11930 - 2446715..2446906 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27231.99 Da        Isoelectric Point: 9.4293

>NTDB_id=299132 DOU34_RS11915 WP_061046585.1 2441377..2442129(-) (comC) [Bacillus amyloliquefaciens strain SH-B74]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFV
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFL
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=299132 DOU34_RS11915 WP_061046585.1 2441377..2442129(-) (comC) [Bacillus amyloliquefaciens strain SH-B74]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGTTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCA
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTTATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTGTC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTTG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.065

99.2

0.576

Multiple sequence alignment