Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   DOU34_RS11115 Genome accession   NZ_CP030097
Coordinates   2292164..2292931 (-) Length   255 a.a.
NCBI ID   WP_007408287.1    Uniprot ID   A0AAP3YCF1
Organism   Bacillus amyloliquefaciens strain SH-B74     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2287164..2297931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOU34_RS11095 - 2287366..2288178 (-) 813 WP_061046611.1 pyruvate, water dikinase regulatory protein -
  DOU34_RS11100 ccpN 2288204..2288842 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  DOU34_RS11105 glyS 2288943..2290982 (-) 2040 WP_047935962.1 glycine--tRNA ligase subunit beta -
  DOU34_RS11110 glyQ 2290975..2291862 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  DOU34_RS11115 recO 2292164..2292931 (-) 768 WP_007408287.1 DNA repair protein RecO Machinery gene
  DOU34_RS11120 - 2292968..2293111 (-) 144 WP_007408286.1 YqzL family protein -
  DOU34_RS11125 era 2293267..2294172 (-) 906 WP_007408285.1 GTPase Era -
  DOU34_RS11130 - 2294153..2294563 (-) 411 WP_003152976.1 cytidine deaminase -
  DOU34_RS11135 - 2294687..2295061 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  DOU34_RS11140 ybeY 2295042..2295515 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  DOU34_RS11145 - 2295516..2297648 (-) 2133 WP_007408284.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29292.91 Da        Isoelectric Point: 8.5625

>NTDB_id=299125 DOU34_RS11115 WP_007408287.1 2292164..2292931(-) (recO) [Bacillus amyloliquefaciens strain SH-B74]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=299125 DOU34_RS11115 WP_007408287.1 2292164..2292931(-) (recO) [Bacillus amyloliquefaciens strain SH-B74]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGA
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACGGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.02

100

0.89

Multiple sequence alignment