Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   DOU34_RS09540 Genome accession   NZ_CP030097
Coordinates   1961125..1961733 (+) Length   202 a.a.
NCBI ID   WP_012117837.1    Uniprot ID   A0AAP5V0D3
Organism   Bacillus amyloliquefaciens strain SH-B74     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1956125..1966733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOU34_RS09500 - 1957145..1957651 (-) 507 WP_061046663.1 PTS glucose transporter subunit IIA -
  DOU34_RS09505 - 1957790..1958203 (+) 414 WP_061046662.1 Hsp20/alpha crystallin family protein -
  DOU34_RS09510 - 1958233..1958700 (-) 468 WP_113629808.1 YppG family protein -
  DOU34_RS09515 - 1958887..1959069 (+) 183 WP_003153532.1 YppF family protein -
  DOU34_RS09520 - 1959108..1959476 (-) 369 WP_007409492.1 YppE family protein -
  DOU34_RS09525 - 1959522..1959767 (-) 246 WP_012117836.1 DUF5446 family protein -
  DOU34_RS09530 sspM 1959973..1960077 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  DOU34_RS09535 - 1960121..1961083 (-) 963 WP_014418234.1 DUF2515 domain-containing protein -
  DOU34_RS09540 recU 1961125..1961733 (+) 609 WP_012117837.1 Holliday junction resolvase RecU Machinery gene
  DOU34_RS09545 - 1961772..1964555 (+) 2784 WP_025284919.1 PBP1A family penicillin-binding protein -
  DOU34_RS09550 - 1964633..1965124 (-) 492 WP_061046661.1 YpoC family protein -
  DOU34_RS09555 nth 1965121..1965780 (-) 660 WP_007409486.1 endonuclease III -
  DOU34_RS09560 dnaD 1965799..1966497 (-) 699 WP_003153516.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23666.75 Da        Isoelectric Point: 9.5778

>NTDB_id=299115 DOU34_RS09540 WP_012117837.1 1961125..1961733(+) (recU) [Bacillus amyloliquefaciens strain SH-B74]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=299115 DOU34_RS09540 WP_012117837.1 1961125..1961733(+) (recU) [Bacillus amyloliquefaciens strain SH-B74]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCCACAACTGACTACAACGGCATTTATAAAGGGCGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGACAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AACAATGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.452

98.515

0.891

Multiple sequence alignment