Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   DOU34_RS07645 Genome accession   NZ_CP030097
Coordinates   1560268..1560702 (+) Length   144 a.a.
NCBI ID   WP_015417516.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SH-B74     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1555268..1565702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOU34_RS07640 - 1558768..1559979 (-) 1212 WP_007409852.1 cytochrome P450 -
  DOU34_RS07645 nucA/comI 1560268..1560702 (+) 435 WP_015417516.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  DOU34_RS07650 - 1560762..1561517 (+) 756 WP_003154084.1 YoaK family protein -
  DOU34_RS07655 - 1561551..1561913 (-) 363 WP_007410383.1 hypothetical protein -
  DOU34_RS07660 - 1562106..1563434 (-) 1329 WP_007410382.1 S8 family peptidase -
  DOU34_RS07665 - 1563613..1563846 (+) 234 WP_015239897.1 hypothetical protein -
  DOU34_RS07670 - 1564102..1564809 (+) 708 WP_007410381.1 poly-gamma-glutamate hydrolase family protein -
  DOU34_RS07675 - 1564869..1565321 (+) 453 WP_007410380.1 OsmC family protein -
  DOU34_RS07680 - 1565335..1565688 (-) 354 WP_007410379.1 multidrug efflux SMR transporter -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15514.44 Da        Isoelectric Point: 7.2418

>NTDB_id=299114 DOU34_RS07645 WP_015417516.1 1560268..1560702(+) (nucA/comI) [Bacillus amyloliquefaciens strain SH-B74]
MNAFMKWAASLLLVISLQFGLTGAGIHSDSAARAASRYDQVLYFPLSKYPETGNHIKDAISAGHSEICTIDRGGAENRRK
ESLKGIPTKPGFDRDEWPMAVCTEGGAGADVRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 435 bp        

>NTDB_id=299114 DOU34_RS07645 WP_015417516.1 1560268..1560702(+) (nucA/comI) [Bacillus amyloliquefaciens strain SH-B74]
ATGAATGCGTTTATGAAATGGGCGGCAAGTCTGCTTTTGGTGATCTCTCTTCAGTTCGGCCTTACGGGCGCCGGTATCCA
TTCGGACAGTGCTGCTCGTGCCGCATCCCGATACGATCAGGTGCTGTATTTCCCGCTGTCAAAATATCCGGAGACGGGAA
ATCATATAAAAGACGCCATTTCGGCAGGTCATTCTGAGATTTGTACAATTGATCGGGGCGGAGCGGAGAATAGAAGGAAA
GAATCATTGAAAGGAATTCCGACAAAGCCCGGGTTTGACCGTGATGAATGGCCCATGGCAGTCTGCACAGAAGGCGGGGC
GGGGGCTGATGTCAGATATGTAACCCCATCAGATAACCGCGGGGCCGGTTCATGGGTTGGAAATCAAATGAGCGGATATT
CCGACGGCACGAGAGTATTATTTATCGTTCAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

57.258

86.111

0.493

Multiple sequence alignment