Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   DOU34_RS06190 Genome accession   NZ_CP030097
Coordinates   1167744..1168028 (+) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SH-B74     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1162744..1173028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOU34_RS06165 - 1163987..1164895 (+) 909 WP_061046813.1 ketopantoate reductase family protein -
  DOU34_RS06170 - 1164927..1166159 (-) 1233 WP_039063007.1 aminopeptidase -
  DOU34_RS06175 - 1166260..1166394 (-) 135 WP_003154559.1 protein YkpC -
  DOU34_RS06180 mreBH 1166466..1167473 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  DOU34_RS06190 abrB 1167744..1168028 (+) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  DOU34_RS06195 - 1168201..1169505 (+) 1305 WP_061046812.1 ATP-binding protein -
  DOU34_RS06200 - 1169507..1170334 (+) 828 WP_032868159.1 gamma-glutamylcyclotransferase family protein -
  DOU34_RS06205 ktrC 1170375..1171040 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  DOU34_RS06210 ade 1171189..1172922 (+) 1734 WP_061046811.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=299109 DOU34_RS06190 WP_003154557.1 1167744..1168028(+) (abrB) [Bacillus amyloliquefaciens strain SH-B74]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=299109 DOU34_RS06190 WP_003154557.1 1167744..1168028(+) (abrB) [Bacillus amyloliquefaciens strain SH-B74]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543

Multiple sequence alignment