Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   DOU34_RS06075 Genome accession   NZ_CP030097
Coordinates   1147247..1147843 (+) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SH-B74     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1142247..1152843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOU34_RS06045 - 1142460..1142915 (+) 456 WP_038463794.1 flavodoxin -
  DOU34_RS06050 dapD 1142997..1143707 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  DOU34_RS06055 - 1143778..1144902 (+) 1125 WP_032868142.1 N-acetyldiaminopimelate deacetylase -
  DOU34_RS06060 - 1144963..1145208 (+) 246 WP_003154596.1 YkuS family protein -
  DOU34_RS06065 - 1145242..1146048 (-) 807 WP_038463800.1 mechanosensitive ion channel family protein -
  DOU34_RS06070 - 1146337..1146795 (+) 459 WP_007409626.1 TlpA disulfide reductase family protein -
  DOU34_RS06075 rok 1147247..1147843 (+) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  DOU34_RS06080 - 1147864..1148856 (-) 993 WP_007409627.1 hypothetical protein -
  DOU34_RS06085 - 1149002..1149604 (+) 603 WP_042635153.1 molybdenum cofactor guanylyltransferase -
  DOU34_RS06090 - 1149656..1150675 (+) 1020 WP_007611113.1 molybdopterin-synthase adenylyltransferase MoeB -
  DOU34_RS06095 glp 1150693..1151985 (+) 1293 WP_007611114.1 gephyrin-like molybdotransferase Glp -
  DOU34_RS06100 mobB 1151946..1152467 (+) 522 WP_033574614.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=299108 DOU34_RS06075 WP_003154591.1 1147247..1147843(+) (rok) [Bacillus amyloliquefaciens strain SH-B74]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=299108 DOU34_RS06075 WP_003154591.1 1147247..1147843(+) (rok) [Bacillus amyloliquefaciens strain SH-B74]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATTAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGTGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843

Multiple sequence alignment