Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   DOU34_RS05975 Genome accession   NZ_CP030097
Coordinates   1131379..1131843 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus amyloliquefaciens strain SH-B74     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1126379..1136843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOU34_RS05955 - 1126859..1128679 (+) 1821 WP_061046817.1 PAS domain-containing protein -
  DOU34_RS05960 - 1128704..1129873 (-) 1170 WP_007611083.1 aminotransferase A -
  DOU34_RS20890 - 1130074..1130235 (-) 162 WP_007409608.1 hypothetical protein -
  DOU34_RS05970 cheV 1130424..1131335 (+) 912 WP_007409609.1 chemotaxis protein CheV -
  DOU34_RS05975 kre 1131379..1131843 (-) 465 WP_003154622.1 YkyB family protein Regulator
  DOU34_RS05980 - 1131966..1133258 (-) 1293 WP_032868138.1 MFS transporter -
  DOU34_RS05985 - 1133334..1133828 (-) 495 WP_095284082.1 L,D-transpeptidase family protein -
  DOU34_RS05990 - 1133903..1134766 (-) 864 WP_061046816.1 metallophosphoesterase -
  DOU34_RS05995 fadH 1134911..1135675 (+) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  DOU34_RS06000 - 1135789..1136337 (+) 549 WP_061046815.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=299107 DOU34_RS05975 WP_003154622.1 1131379..1131843(-) (kre) [Bacillus amyloliquefaciens strain SH-B74]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=299107 DOU34_RS05975 WP_003154622.1 1131379..1131843(-) (kre) [Bacillus amyloliquefaciens strain SH-B74]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929

Multiple sequence alignment