Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   DOU34_RS04300 Genome accession   NZ_CP030097
Coordinates   833892..834083 (+) Length   63 a.a.
NCBI ID   WP_007409124.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SH-B74     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 828892..839083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOU34_RS04265 argF 829744..830715 (+) 972 WP_061046905.1 ornithine carbamoyltransferase -
  DOU34_RS04270 - 830791..830970 (+) 180 WP_003155070.1 YjzC family protein -
  DOU34_RS04275 - 831007..831192 (-) 186 WP_003155069.1 YjzD family protein -
  DOU34_RS04285 - 831453..832187 (+) 735 WP_015417203.1 hypothetical protein -
  DOU34_RS04290 - 832270..832836 (+) 567 WP_007409126.1 hypothetical protein -
  DOU34_RS04295 med 832926..833879 (+) 954 WP_007409125.1 BMP family ABC transporter substrate-binding protein Regulator
  DOU34_RS04300 comZ 833892..834083 (+) 192 WP_007409124.1 ComZ family protein Regulator
  DOU34_RS04305 - 834112..834330 (-) 219 WP_007409123.1 hypothetical protein -
  DOU34_RS04310 - 834498..835436 (+) 939 WP_007409122.1 beta-ketoacyl-ACP synthase III -
  DOU34_RS04315 fabF 835459..836697 (+) 1239 WP_015417206.1 beta-ketoacyl-ACP synthase II -
  DOU34_RS04320 - 836780..837565 (+) 786 WP_061046904.1 DUF2268 domain-containing protein -
  DOU34_RS04325 - 837739..838725 (+) 987 WP_012117279.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 63 a.a.        Molecular weight: 7185.30 Da        Isoelectric Point: 4.2259

>NTDB_id=299100 DOU34_RS04300 WP_007409124.1 833892..834083(+) (comZ) [Bacillus amyloliquefaciens strain SH-B74]
MQHEKSLEFMQIAMKYLPEAKAELEKSGIDLSLEMIQPFMDLFTSVMAEAYELGRSDAGELNK

Nucleotide


Download         Length: 192 bp        

>NTDB_id=299100 DOU34_RS04300 WP_007409124.1 833892..834083(+) (comZ) [Bacillus amyloliquefaciens strain SH-B74]
ATGCAGCATGAAAAGTCTCTTGAATTTATGCAGATCGCGATGAAATACCTGCCGGAAGCAAAGGCGGAGCTTGAGAAATC
CGGCATAGATCTGTCTTTGGAAATGATTCAGCCGTTTATGGACCTGTTTACATCGGTCATGGCGGAAGCGTATGAGCTTG
GCAGATCTGATGCCGGGGAGCTGAATAAATAA

Domains

Predicted by InterproScan.

ComZ (ComZ)

(4-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

84.483

92.063

0.778

Multiple sequence alignment