Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   DOU34_RS02845 Genome accession   NZ_CP030097
Coordinates   573802..574593 (+) Length   263 a.a.
NCBI ID   WP_007408552.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SH-B74     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 568802..579593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOU34_RS02820 - 570796..571680 (+) 885 WP_007408548.1 PhzF family phenazine biosynthesis isomerase -
  DOU34_RS02825 - 571757..572341 (+) 585 WP_061046517.1 nitroreductase -
  DOU34_RS02830 - 572381..572572 (-) 192 WP_007408550.1 YfhD family protein -
  DOU34_RS02835 - 572643..572753 (-) 111 WP_003155504.1 YfhE family protein -
  DOU34_RS02840 - 572811..573710 (-) 900 WP_047935473.1 TIGR01777 family oxidoreductase -
  DOU34_RS02845 recX 573802..574593 (+) 792 WP_007408552.1 recombination regulator RecX Regulator
  DOU34_RS02850 - 574600..574914 (+) 315 WP_007408553.1 YfhH family protein -
  DOU34_RS02855 - 575059..576252 (+) 1194 WP_076982912.1 MFS transporter -
  DOU34_RS02860 - 576292..576681 (-) 390 WP_020955526.1 DUF2606 family protein -
  DOU34_RS02865 - 576644..577555 (-) 912 WP_020955527.1 trypsin-like serine protease -
  DOU34_RS02870 - 577702..577854 (-) 153 WP_003155495.1 small, acid-soluble spore protein K -
  DOU34_RS02875 - 577978..578247 (+) 270 WP_003155492.1 YfhJ family protein -
  DOU34_RS02880 - 578379..578906 (+) 528 WP_015417063.1 SH3 domain-containing protein -
  DOU34_RS02885 - 578992..579327 (+) 336 WP_007408558.1 SdpI family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30969.12 Da        Isoelectric Point: 5.8035

>NTDB_id=299091 DOU34_RS02845 WP_007408552.1 573802..574593(+) (recX) [Bacillus amyloliquefaciens strain SH-B74]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDEFDILEIQYGDDVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPDMVISEVIHKLYDYSYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDEQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKAHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=299091 DOU34_RS02845 WP_007408552.1 573802..574593(+) (recX) [Bacillus amyloliquefaciens strain SH-B74]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTGCTTGTGCGTTTTGACCTGAAAAAAGGGAAAGAACTGGACGAGTTTGACATTCTTGAAATCC
AGTACGGCGATGACGTGAAAAAAGCCTTTAACCGCGCCGTAGAATTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTC
CGGGATCATCTGAAGAAAAAAGAAACACCGGACATGGTCATTTCTGAAGTCATCCATAAACTGTACGATTACAGCTACTT
AAATGACAAAGAATTTGCCGAAGCCTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGCCCTGACGTCCTGTTCCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATCAAGGAGACGCTCAGTGCGTTTACATTTGATGAGCAGATACAAGAA
GCGCTGAAACATATCGGCAAAATCCTGAAAAAAGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTCGACGTCATCAATGCCGCTCTGGAACAGACGGAGTATGAAAATGATGATGAAGCCG
AGATGGAAGCTCTGAAGGCTCATGCGGAAAAAGCGATCAGGAAATACCGCTATGACGGCAGTTATGAAAGCGGAATGAAG
GTCAAACAGTACTTATTCAGAAAAGGATTCTCGATTGACGATATTGATCAATTCTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

79.087

100

0.791

Multiple sequence alignment