Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CTM55_RS12210 Genome accession   NZ_CP030095
Coordinates   672115..673494 (-) Length   459 a.a.
NCBI ID   WP_112200420.1    Uniprot ID   -
Organism   Prevotella intermedia strain KCOM 2734     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 667115..678494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CTM55_RS12190 (CTM55_12190) - 667188..667826 (+) 639 WP_096407858.1 DUF4827 domain-containing protein -
  CTM55_RS12195 (CTM55_12195) glmM 667893..669284 (+) 1392 WP_096407863.1 phosphoglucosamine mutase -
  CTM55_RS12200 (CTM55_12200) yihA 669295..669909 (+) 615 WP_014708668.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  CTM55_RS12205 (CTM55_12205) - 669913..671694 (+) 1782 WP_112200419.1 ABC-F family ATP-binding cassette domain-containing protein -
  CTM55_RS12210 (CTM55_12210) radA 672115..673494 (-) 1380 WP_112200420.1 DNA repair protein RadA Machinery gene
  CTM55_RS12215 (CTM55_12215) - 673561..674460 (+) 900 WP_099836674.1 ABC transporter substrate-binding protein -
  CTM55_RS12220 (CTM55_12220) - 674562..676712 (+) 2151 WP_239494341.1 tetratricopeptide repeat protein -
  CTM55_RS12225 (CTM55_12225) - 677089..677892 (-) 804 WP_028905714.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49667.35 Da        Isoelectric Point: 7.6622

>NTDB_id=299083 CTM55_RS12210 WP_112200420.1 672115..673494(-) (radA) [Prevotella intermedia strain KCOM 2734]
MTKDKRAYVCDNCGQESAKWIGKCPTCGQWNTFKQIRIAPNTGLSTGEKLVAHTFGAPKRNIPQALNAVSSAEEIRIDMK
DSELNRVLGGGLVAGSMVLIGGEPGIGKSTLTLQTLLATDRKVLYVSGEESPQQIKMRALRIAETIPDNIVIFSETSVEK
IFSCIKDVKPELLVVDSIQTVATETVASSAGSITQIRESAAALLQLAKSSDIPVILIGHINKEGSIAGPKVLEHIVDTVL
QFEGDQHYMYRILRSIKNRFGSTSELGIYEMRQNGLRPVSNPSELLLTDTPDDLSGVAISSAIEGVRPFLVETQALVSSA
AYGTPQRSATGFDQRRLNMLLAVLEKRVGFKLMQKDVFLNIAGGLRITDMAMDLSVIAAVLSSNVDTPIEAGWCMAGEVG
LSGEVRPVSRIEQRIAEAEKLGFSHIIIPKNNAQGLKGRYKIATHPVAKVEEALRLLFG

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=299083 CTM55_RS12210 WP_112200420.1 672115..673494(-) (radA) [Prevotella intermedia strain KCOM 2734]
ATGACAAAAGATAAAAGAGCCTACGTCTGCGATAACTGCGGGCAGGAAAGTGCAAAATGGATTGGCAAATGTCCGACCTG
CGGACAGTGGAACACGTTCAAGCAAATCCGTATCGCCCCCAACACGGGGCTGAGTACGGGCGAGAAGCTGGTTGCACACA
CCTTTGGCGCACCGAAACGCAACATTCCGCAAGCCCTCAATGCGGTTTCTTCGGCAGAAGAAATCCGTATTGACATGAAG
GACAGCGAGTTGAATCGTGTGCTTGGAGGTGGACTTGTGGCAGGCAGTATGGTGCTGATTGGTGGCGAACCAGGTATTGG
CAAGAGTACGCTGACGCTGCAAACGCTGCTCGCTACCGACCGAAAGGTGCTCTATGTGAGCGGTGAGGAAAGTCCGCAGC
AGATTAAGATGCGTGCATTGCGCATTGCCGAAACCATTCCCGACAATATCGTGATATTTTCGGAAACATCAGTGGAAAAG
ATATTCAGCTGTATCAAGGACGTGAAACCTGAACTGTTGGTTGTAGACTCTATACAAACAGTTGCCACAGAAACAGTTGC
AAGCAGTGCTGGAAGTATTACTCAAATACGAGAGAGTGCTGCTGCCTTGCTCCAATTGGCGAAATCGAGCGACATTCCTG
TCATTCTTATCGGTCATATCAACAAGGAAGGCTCCATTGCGGGACCGAAAGTACTGGAGCATATCGTAGATACGGTGTTG
CAATTCGAAGGCGACCAACATTATATGTACCGCATCTTGCGCAGCATAAAGAACCGTTTCGGTTCTACTTCCGAACTTGG
AATATACGAAATGCGCCAAAACGGCTTGCGCCCAGTAAGCAATCCATCGGAGTTGCTGCTCACCGACACGCCCGACGACC
TATCGGGGGTTGCCATTTCGAGTGCTATCGAGGGTGTGCGCCCCTTCCTTGTGGAAACGCAAGCCCTTGTTTCGTCGGCT
GCTTACGGCACTCCGCAGCGTTCGGCAACAGGTTTCGACCAGCGTCGCCTTAATATGCTGCTCGCCGTACTTGAGAAACG
AGTGGGCTTTAAGCTGATGCAGAAGGACGTTTTCCTGAATATAGCTGGCGGACTGCGCATTACCGATATGGCGATGGATT
TGAGTGTGATAGCAGCAGTGCTGTCGTCGAACGTCGATACGCCCATCGAGGCAGGCTGGTGTATGGCAGGCGAAGTGGGA
TTGAGTGGCGAAGTGCGCCCCGTCAGTCGTATAGAGCAACGCATTGCCGAAGCCGAGAAGTTGGGTTTCAGCCACATCAT
TATTCCTAAAAACAATGCACAGGGCTTGAAAGGCAGATACAAGATAGCCACGCACCCCGTTGCAAAGGTGGAAGAAGCCT
TGCGTCTGCTGTTCGGATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(75-224)

Subunit ChlI of Mg-chelatase (ChlI)

(346-432)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.276

100

0.488
  radA Streptococcus mitis NCTC 12261

45.043

100

0.455
  radA Streptococcus mitis SK321

45.043

100

0.455
  radA Streptococcus pneumoniae Rx1

45.043

100

0.455
  radA Streptococcus pneumoniae D39

45.043

100

0.455
  radA Streptococcus pneumoniae R6

45.043

100

0.455
  radA Streptococcus pneumoniae TIGR4

45.043

100

0.455

Multiple sequence alignment