Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DPH57_RS10110 Genome accession   NZ_CP030092
Coordinates   2389374..2390750 (-) Length   458 a.a.
NCBI ID   WP_112937646.1    Uniprot ID   A0A7U6B4A5
Organism   Massilia sp. YMA4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2384374..2395750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DPH57_RS10085 (DPH57_10085) sixA 2384726..2385184 (+) 459 WP_112937642.1 phosphohistidine phosphatase SixA -
  DPH57_RS10090 (DPH57_10090) - 2385602..2386651 (+) 1050 WP_227470645.1 patatin-like phospholipase family protein -
  DPH57_RS10095 (DPH57_10095) - 2386688..2387371 (+) 684 WP_227470646.1 transposase -
  DPH57_RS10100 (DPH57_10100) fliD 2387515..2388864 (-) 1350 WP_112937644.1 flagellar filament capping protein FliD -
  DPH57_RS10105 (DPH57_10105) - 2388987..2389271 (-) 285 WP_229410279.1 PilZ domain-containing protein -
  DPH57_RS10110 (DPH57_10110) radA 2389374..2390750 (-) 1377 WP_112937646.1 DNA repair protein RadA Machinery gene
  DPH57_RS10115 (DPH57_10115) alr 2390798..2391898 (-) 1101 WP_112937647.1 alanine racemase -
  DPH57_RS10120 (DPH57_10120) lplT 2392063..2393325 (+) 1263 WP_112937648.1 lysophospholipid transporter LplT -
  DPH57_RS10125 (DPH57_10125) - 2393344..2394345 (-) 1002 WP_112937649.1 DUF1853 family protein -
  DPH57_RS10130 (DPH57_10130) - 2394329..2395318 (-) 990 WP_112937650.1 uracil-DNA glycosylase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48943.44 Da        Isoelectric Point: 7.7234

>NTDB_id=299057 DPH57_RS10110 WP_112937646.1 2389374..2390750(-) (radA) [Massilia sp. YMA4]
MAKAKTNYTCSECGGTSTKWTGQCPACRQWNTMVETVVETAGVNRFSQGQHQALAQTAPVLSLHEIEALDVPRFGTGIDE
FDRVLGGGLVAGGVVLIGGDPGIGKSTLLLQALAEMSRLRSVLYVSGEESGAQIALRAKRLAIDARDFKLQAEIQLEKIL
GTLADVRPQVAVIDSIQTLYSDALTSAPGSVAQVRECAAQLTRVAKQTGVTIILVGHVTKEGALAGPRVLEHIVDTVLYF
EGDSHSSFRLVRAIKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHDNQVPGSCVMVTQEGTRPLLVEIQALVDASHL
PNARRLSVGLEQNRLAMLLAVLHRHAGIAAFDQDVFINAVGGVKITEPAADLAVLLAINSSMRNKALPRGFVVFGEVGLA
GEIRPAPRGQERLREAAKLGFSIAMIPKANAPKQPIEGMTIIAVDRIDDAFNRLRELQ

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=299057 DPH57_RS10110 WP_112937646.1 2389374..2390750(-) (radA) [Massilia sp. YMA4]
ATGGCAAAAGCAAAGACCAACTACACCTGCAGCGAATGCGGCGGCACCAGCACCAAATGGACGGGCCAGTGCCCGGCGTG
CCGGCAGTGGAACACGATGGTGGAAACCGTCGTCGAGACGGCCGGCGTAAACCGCTTCTCGCAGGGCCAGCACCAGGCGC
TGGCGCAGACGGCGCCGGTGCTGTCGCTGCACGAGATCGAGGCGCTCGACGTGCCCCGTTTCGGCACGGGCATCGATGAA
TTCGACCGCGTGCTGGGCGGTGGCCTGGTGGCCGGCGGCGTCGTGCTGATCGGCGGCGACCCCGGCATCGGCAAATCCAC
CCTGCTGCTGCAGGCGCTGGCCGAGATGTCGCGCCTGCGCAGCGTGCTGTACGTGTCGGGCGAGGAGTCGGGCGCGCAGA
TCGCGCTGCGCGCCAAGCGCCTGGCCATCGACGCCAGGGATTTCAAACTGCAGGCCGAGATCCAGCTGGAAAAGATCCTC
GGCACGCTGGCGGACGTGCGGCCGCAGGTGGCCGTGATCGACTCGATCCAGACCCTGTATTCGGACGCGCTGACGTCCGC
GCCGGGCTCGGTGGCGCAGGTGCGCGAATGCGCGGCGCAGCTGACGCGCGTGGCCAAGCAGACCGGCGTGACGATCATCC
TGGTCGGCCACGTGACGAAGGAGGGCGCGCTGGCCGGGCCGCGCGTGCTCGAGCACATCGTCGACACGGTGCTGTACTTC
GAGGGCGACAGCCACTCCAGCTTCCGCCTGGTGCGCGCCATCAAGAACCGCTTCGGCGCCGTCAACGAGCTGGGCGTGTT
CGCGATGACGGAGAAGGGCCTGAAGGGCGTCTCGAATCCGTCCGCGCTGTTCCTGTCGCAGCACGACAACCAGGTGCCCG
GTTCCTGCGTGATGGTCACGCAGGAAGGCACCCGGCCGCTGCTGGTGGAGATCCAGGCGCTGGTCGACGCCAGCCATCTG
CCCAATGCGCGCCGCCTGTCCGTCGGCCTGGAGCAGAACCGGCTGGCGATGCTGCTGGCCGTATTGCACCGGCATGCCGG
CATCGCCGCGTTCGACCAGGACGTGTTCATCAACGCGGTGGGCGGCGTCAAGATCACGGAGCCGGCGGCCGACCTGGCGG
TGCTGCTGGCGATCAACTCATCGATGCGCAACAAGGCGCTGCCACGCGGCTTCGTGGTGTTCGGCGAGGTGGGCCTGGCC
GGCGAGATCCGGCCGGCGCCGCGCGGGCAGGAGCGTTTGCGCGAGGCCGCCAAGCTGGGCTTTTCCATCGCCATGATCCC
GAAGGCCAACGCGCCCAAGCAGCCGATCGAGGGCATGACGATCATTGCCGTCGACCGGATCGACGACGCTTTCAATCGCT
TGCGCGAGCTGCAGTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(74-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U6B4A5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.366

100

0.485
  radA Streptococcus mitis NCTC 12261

46.389

99.782

0.463
  radA Streptococcus mitis SK321

46.389

99.782

0.463
  radA Streptococcus pneumoniae TIGR4

47.63

96.725

0.461
  radA Streptococcus pneumoniae D39

47.63

96.725

0.461
  radA Streptococcus pneumoniae Rx1

47.63

96.725

0.461
  radA Streptococcus pneumoniae R6

47.63

96.725

0.461

Multiple sequence alignment