Detailed information NTG0299050

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: DPH67_RS09135
• Genome accession: NZ_CP030089
• Coordinates: 1809101..1810474 (-)
• Length: 457 a.a.
• NCBI ID: WP_003675938.1
• Uniprot ID: -
• Organism: Limosilactobacillus reuteri strain YSJL-12
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1804101..1815474

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DPH67_RS09100 (DPH67_09115)	secE	1804578..1804754 (-)	177	WP_003675931.1	preprotein translocase subunit SecE	-
DPH67_RS09105 (DPH67_09120)	rpmG	1804766..1804915 (-)	150	WP_003666293.1	50S ribosomal protein L33	-
DPH67_RS09110 (DPH67_09125)	rlmB	1804981..1805730 (-)	750	WP_003675933.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
DPH67_RS09115 (DPH67_09130)	-	1805720..1806133 (-)	414	WP_003670544.1	Mini-ribonuclease 3	-
DPH67_RS09120 (DPH67_09135)	cysS	1806145..1807557 (-)	1413	WP_003675935.1	cysteine--tRNA ligase	-
DPH67_RS09130 (DPH67_09145)	-	1807931..1809082 (-)	1152	WP_003675937.1	PIN/TRAM domain-containing protein	-
DPH67_RS09135 (DPH67_09150)	radA	1809101..1810474 (-)	1374	WP_003675938.1	DNA repair protein RadA	Machinery gene
DPH67_RS09140 (DPH67_09155)	-	1810500..1811036 (-)	537	WP_003675940.1	hypothetical protein	-
DPH67_RS09145 (DPH67_09160)	-	1811175..1811471 (+)	297	WP_003675942.1	GNAT family N-acetyltransferase	-
DPH67_RS09150 (DPH67_09165)	rpiA	1811483..1812166 (+)	684	WP_003666281.1	ribose-5-phosphate isomerase RpiA	-
DPH67_RS09155 (DPH67_09170)	-	1812195..1813535 (+)	1341	WP_016497087.1	aminopeptidase C	-
DPH67_RS09160 (DPH67_09175)	-	1813643..1814434 (-)	792	WP_003675946.1	transporter substrate-binding domain-containing protein	-
DPH67_RS09165 (DPH67_09180)	-	1814450..1815199 (-)	750	WP_003675947.1	amino acid ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 49923.16 Da
• Isoelectric Point: 8.1257

>NTDB_id=299050 DPH67_RS09135 WP_003675938.1 1809101..1810474(-) (radA) [Limosilactobacillus reuteri strain YSJL-12]
MAKVRTQYVCQNCGYNSPRYLGRCPNCGEWNTLVEEQVEASSAPTKKATTTLTGLVAKPQKINEIDSTETPRVKTKLNEL
NRVLGGGIVPGSLILIGGDPGIGKSTLLLQVSGQLSDEHHRVLYVSGEESGTQIKMRAERLKVAGDDFYVYPETNMDSIR
DTIRDLKPEYVVIDSVQTMQATDVSSAIGSVSQIREVTAQLMQIAKSNNITIFVVGHVTKGGAIAGPKILEHMVDTVLYF
EGDLHHTYRILRSVKNRFGSTNELGIFEMHTNGLTEVKNPSEIFLEERLHDATGSAVVVSLEGTRPILVEIQALVTPTVY
GNAQRTATGLSRNRVSLIMAVLEKRANLMLQNQDAYLKAAGGVKLDEPAIDLAIAVSIASSYRDKGTQPTDAFVGEVGLT
GEIRRVNRIEQRVAEAEKLGFKRIFISKNNLKGWKPSTNIQVIGVSTLKEALYLALG

Nucleotide

• Length: 1374 bp

>NTDB_id=299050 DPH67_RS09135 WP_003675938.1 1809101..1810474(-) (radA) [Limosilactobacillus reuteri strain YSJL-12]
ATGGCAAAAGTTCGAACACAATATGTTTGCCAAAACTGTGGTTACAACTCACCACGCTACTTAGGGCGGTGTCCAAACTG
TGGTGAGTGGAATACTTTAGTAGAAGAACAGGTAGAAGCCAGTTCTGCACCAACAAAAAAAGCAACCACCACCTTAACCG
GCTTAGTTGCCAAACCACAGAAAATTAATGAGATTGATAGTACAGAGACTCCCCGCGTTAAAACAAAATTGAACGAGTTA
AATCGCGTTTTAGGTGGGGGAATCGTTCCAGGATCACTAATTCTAATTGGTGGGGATCCCGGAATCGGGAAATCCACCCT
CCTTTTACAAGTTTCTGGACAATTGAGCGATGAGCATCACCGAGTTTTATATGTGTCTGGAGAAGAAAGCGGGACACAGA
TTAAAATGCGGGCGGAACGGTTGAAGGTTGCTGGAGATGACTTTTATGTGTATCCAGAAACGAATATGGATAGTATTCGA
GACACTATTCGCGACCTCAAGCCAGAGTATGTCGTTATTGACTCCGTGCAAACGATGCAGGCAACTGATGTAAGTTCCGC
GATTGGTAGTGTATCGCAAATTCGTGAAGTTACCGCCCAGTTAATGCAAATTGCTAAAAGTAATAACATTACGATTTTTG
TTGTTGGTCATGTGACAAAGGGTGGTGCAATCGCCGGTCCAAAGATTTTAGAGCACATGGTTGATACGGTTTTGTATTTT
GAAGGAGATTTGCACCATACATATCGTATTTTGCGATCAGTGAAAAATCGATTTGGTTCAACCAACGAGCTCGGCATTTT
TGAGATGCACACAAATGGGCTGACGGAAGTAAAAAATCCATCAGAAATCTTTTTAGAAGAACGATTACATGATGCAACTG
GTTCAGCGGTGGTTGTTTCATTAGAAGGAACGCGACCGATTTTAGTTGAAATTCAGGCGCTGGTAACACCGACCGTTTAT
GGGAATGCACAGCGAACTGCTACCGGTTTGAGTCGAAACCGAGTATCATTGATAATGGCGGTATTAGAGAAACGTGCTAA
CCTAATGCTTCAAAATCAAGATGCTTACTTAAAAGCAGCTGGGGGCGTTAAGTTAGATGAGCCAGCGATTGATTTAGCAA
TTGCGGTAAGCATTGCCTCCAGTTACCGGGATAAAGGTACTCAACCAACTGACGCATTTGTCGGTGAAGTAGGTTTAACT
GGGGAAATTCGCCGGGTAAATCGCATTGAACAGCGGGTTGCTGAAGCAGAAAAACTTGGCTTTAAACGGATCTTTATTTC
CAAAAATAATTTAAAGGGTTGGAAACCGTCAACTAATATTCAAGTAATTGGTGTCTCAACCCTGAAAGAAGCGTTATATT
TAGCGTTGGGGTAA

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (363-430)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• AAA domain (AAA_25) (65-222)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Streptococcus mitis NCTC 12261	66.372	98.906	0.656
radA	Streptococcus mitis SK321	66.372	98.906	0.656
radA	Streptococcus pneumoniae Rx1	66.15	98.906	0.654
radA	Streptococcus pneumoniae D39	66.15	98.906	0.654
radA	Streptococcus pneumoniae R6	66.15	98.906	0.654
radA	Streptococcus pneumoniae TIGR4	66.15	98.906	0.654
radA	Bacillus subtilis subsp. subtilis str. 168	62.801	100	0.628