Detailed information NTG0299031

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: DPM16_RS07440
• Genome accession: NZ_CP030086
• Coordinates: 1477301..1478191 (+)
• Length: 296 a.a.
• NCBI ID: WP_112208579.1
• Uniprot ID: -
• Organism: Polynucleobacter paneuropaeus strain MWH-Creno-4B4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1472301..1483191

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DPM16_RS07410 (DPM16_07410)	pth	1472532..1473122 (+)	591	WP_112205454.1	aminoacyl-tRNA hydrolase	-
DPM16_RS07415 (DPM16_07415)	-	1473119..1473382 (-)	264	WP_112205456.1	YfhL family 4Fe-4S dicluster ferredoxin	-
DPM16_RS07420 (DPM16_07420)	coaD	1473401..1473892 (-)	492	WP_112205458.1	pantetheine-phosphate adenylyltransferase	-
DPM16_RS07425 (DPM16_07425)	rsmD	1473928..1474533 (-)	606	WP_112318483.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
DPM16_RS07430 (DPM16_07430)	-	1474536..1475873 (-)	1338	WP_112318484.1	pitrilysin family protein	-
DPM16_RS07435 (DPM16_07435)	-	1475870..1477240 (-)	1371	WP_112318485.1	pitrilysin family protein	-
DPM16_RS07440 (DPM16_07440)	pilA	1477301..1478191 (+)	891	WP_112208579.1	signal recognition particle-docking protein FtsY	Machinery gene
DPM16_RS07445 (DPM16_07445)	rpoH	1478284..1479225 (+)	942	WP_112318486.1	RNA polymerase sigma factor RpoH	-
DPM16_RS07450 (DPM16_07450)	-	1479236..1479826 (-)	591	WP_112318603.1	SCO family protein	-
DPM16_RS07455 (DPM16_07455)	cyoE	1479828..1480721 (-)	894	WP_112318487.1	heme o synthase	-
DPM16_RS07460 (DPM16_07460)	-	1480718..1481848 (-)	1131	WP_112318488.1	heme A synthase	-
DPM16_RS07465 (DPM16_07465)	-	1481848..1482504 (-)	657	WP_112208583.1	hypothetical protein	-

Sequence

Protein

• Length: 296 a.a.
• Molecular weight: 31820.55 Da
• Isoelectric Point: 6.6562

>NTDB_id=299031 DPM16_RS07440 WP_112208579.1 1477301..1478191(+) (pilA) [Polynucleobacter paneuropaeus strain MWH-Creno-4B4]
MLGLRKTLGSLFKSSRIDEAWFDTLEDSLIQSDVGMPTCMQLMASLRQAAKSEKVQDSETLQALLIQELTRLLQALEAHP
NPIFEHQSSHHPEIWLIVGVNGAGKTTTIGKLCKQFQSQGKSILLAAGDTFRAAARNQLLEWGQRNQVDVIAQESGDAAA
VAHDAIHAAISRKTDILIIDTAGRLATQDHLMEELKKVKRVIAKVLPGAPHHTLLILDGNTGQNGLNQVKAFHEALGLTG
LIVTKLDGTAKGGVICALANTFQDGPKPAVLALGKGEGIGDLIPFNASEYCAELFN

Nucleotide

• Length: 891 bp

>NTDB_id=299031 DPM16_RS07440 WP_112208579.1 1477301..1478191(+) (pilA) [Polynucleobacter paneuropaeus strain MWH-Creno-4B4]
ATGCTTGGCCTACGTAAAACCCTCGGATCGCTTTTCAAATCAAGCCGGATTGATGAGGCCTGGTTTGATACTCTCGAAGA
CTCCCTGATTCAGAGTGATGTAGGTATGCCGACGTGCATGCAATTAATGGCCAGCTTACGTCAAGCTGCTAAATCAGAAA
AAGTACAAGACTCAGAAACCCTACAAGCATTATTGATTCAAGAGCTCACCAGGCTATTACAAGCATTAGAGGCTCACCCA
AATCCCATCTTTGAACATCAAAGTAGTCATCATCCAGAAATCTGGCTCATTGTTGGTGTCAATGGCGCTGGCAAGACCAC
CACGATTGGTAAGCTCTGCAAACAATTCCAGTCACAAGGAAAGTCCATTCTTCTGGCTGCTGGAGACACTTTCCGTGCCG
CCGCACGTAATCAACTCTTAGAGTGGGGGCAACGCAATCAAGTCGATGTGATTGCCCAAGAAAGTGGCGATGCTGCAGCC
GTGGCACACGATGCTATTCATGCTGCGATTTCTCGTAAGACGGACATATTGATTATTGACACTGCAGGCAGACTGGCCAC
ACAAGACCATTTGATGGAAGAACTGAAAAAGGTCAAACGCGTCATCGCCAAGGTCCTTCCAGGGGCGCCTCACCACACGC
TATTGATTTTGGATGGCAATACGGGCCAGAATGGTTTAAACCAAGTAAAGGCCTTCCACGAAGCGCTGGGACTCACTGGT
CTGATCGTTACCAAACTCGATGGGACTGCCAAAGGCGGGGTTATTTGCGCTCTTGCCAACACCTTTCAAGACGGCCCCAA
ACCTGCAGTTTTAGCGCTTGGCAAAGGCGAAGGAATCGGGGATCTAATCCCCTTCAATGCTTCTGAATATTGCGCCGAAT
TATTCAATTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (93-295)

• SRP54-type protein, helical bundle domain (SRP54_N) (4-69)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	51.877	98.986	0.514