Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ES968_RS06305 Genome accession   NZ_CP035395
Coordinates   1225680..1227509 (+) Length   609 a.a.
NCBI ID   WP_173401378.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103697     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1220680..1232509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES968_RS06270 (ES968_06270) yjbC 1221352..1221930 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  ES968_RS06275 (ES968_06275) spx 1222111..1222506 (+) 396 WP_014476435.1 transcriptional regulator Spx -
  ES968_RS06280 (ES968_06280) yjbE 1222549..1223205 (-) 657 WP_014479447.1 TerC family protein -
  ES968_RS06285 (ES968_06285) - 1223375..1223515 (+) 141 WP_119122854.1 hypothetical protein -
  ES968_RS06290 (ES968_06290) mecA 1223482..1224138 (+) 657 WP_003245194.1 adaptor protein MecA Regulator
  ES968_RS06295 (ES968_06295) - 1224133..1224255 (-) 123 WP_003245684.1 hypothetical protein -
  ES968_RS06300 (ES968_06300) coiA 1224299..1225450 (+) 1152 WP_046380934.1 competence protein CoiA Machinery gene
  ES968_RS06305 (ES968_06305) pepF 1225680..1227509 (+) 1830 WP_173401378.1 oligoendopeptidase F Regulator
  ES968_RS06310 (ES968_06310) - 1227547..1227714 (-) 168 WP_003244944.1 hypothetical protein -
  ES968_RS06320 (ES968_06320) spxH 1228029..1228928 (-) 900 WP_003245184.1 protease adaptor protein SpxH -
  ES968_RS06325 (ES968_06325) bhbI 1228925..1229323 (-) 399 WP_003232928.1 group 2 truncated hemoglobin YjbI -
  ES968_RS06330 (ES968_06330) cwlQ 1229578..1230312 (-) 735 WP_014479451.1 bifunctional muramidase/murein lytic transglycosylase -
  ES968_RS06335 (ES968_06335) yjbK 1230327..1230899 (-) 573 WP_014479452.1 CYTH domain-containing protein -
  ES968_RS06340 (ES968_06340) - 1231024..1231392 (+) 369 WP_014479453.1 hypothetical protein -
  ES968_RS06345 (ES968_06345) yjbM 1231421..1232056 (+) 636 WP_003245294.1 GTP diphosphokinase -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 70100.02 Da        Isoelectric Point: 5.2218

>NTDB_id=299016 ES968_RS06305 WP_173401378.1 1225680..1227509(+) (pepF) [Bacillus subtilis strain SRCM103697]
MAEEKKANQLPDRSEVKAEDTWRLEDIFPSDEAWNKEFQAVKELIPNLSKYKGKLADSADHLYEALTYQDKVMERLGRLY
TYAHMRSDQDTGNSFYQGLNDKAGNLYTQAASATAYLVPEILSIEEDKLQQFILEKEELKLYSHAIEEITKERPHVLSEK
EEALLAEASEVLGSSSNTFSVLNNADITFPSIKDEDGNEKQITHGNFINFLESENREVRKNAFDAVYKTYGQYKNTMATT
LSGTVKKDNFYARVKKYKSAREAALSNNSIPEEVYDNLVKTINKHLPLLHRYIALRKKVLELDEVHIYDLYTPLVKDAGM
KVTYEEAKDYMLKGLAPLGEEYASILKEGLENRWVDVYENKGKRNGAYSSGAYGTNPYILMNWHNNVNNLFTLVHEFGHS
VHSYYTRKHQPYPYGNYSIFVAEVASTTNEALLGEYLLNNLEDEKQRLYILNHMLEGFRGTVFRQTMFAEFEHLIHTKAQ
EGEPLTPELLTKVYYDLNKKYFGDGMVIDKEIGLEWSRIPHFYYNYYVYQYATGYSAAQALSSQILKEGKPAVDRYIDFL
KAGSSQYPIDVLKKAGVDMTSPEPIEAACKMFEEKLDEMEELLMKVKQS

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=299016 ES968_RS06305 WP_173401378.1 1225680..1227509(+) (pepF) [Bacillus subtilis strain SRCM103697]
ATGGCTGAGGAAAAAAAAGCAAACCAACTGCCTGACAGAAGTGAGGTAAAGGCAGAAGACACATGGAGACTTGAGGATAT
TTTTCCTAGTGATGAGGCCTGGAATAAAGAATTTCAAGCTGTAAAAGAATTAATTCCGAATTTATCTAAGTATAAAGGAA
AGCTGGCAGATTCAGCTGATCATTTATACGAGGCTCTTACGTATCAAGATAAAGTGATGGAGCGGCTGGGTAGGCTGTAC
ACATATGCGCATATGCGCTCTGACCAGGATACTGGGAACTCCTTTTACCAGGGGCTGAATGACAAGGCGGGAAACCTGTA
TACACAGGCCGCAAGCGCGACAGCTTATCTGGTTCCGGAGATTTTATCCATAGAAGAAGACAAACTGCAGCAGTTCATTC
TTGAAAAAGAAGAATTAAAGCTGTACTCTCATGCGATTGAGGAGATTACAAAGGAACGTCCGCATGTGCTGAGCGAGAAG
GAAGAGGCACTGCTTGCTGAAGCCTCCGAGGTACTGGGGTCATCTTCAAATACATTCAGTGTGTTAAATAACGCAGATAT
AACGTTTCCATCCATTAAAGACGAAGATGGGAATGAAAAACAGATCACTCACGGCAACTTTATTAATTTCTTGGAAAGTG
AAAACCGTGAAGTCCGCAAAAATGCGTTTGACGCAGTGTATAAAACGTACGGACAATATAAAAATACAATGGCCACGACG
CTTAGCGGCACTGTGAAAAAGGACAACTTCTACGCGAGAGTGAAAAAGTACAAGTCCGCGCGTGAGGCTGCGCTTTCTAA
CAACAGTATTCCTGAGGAAGTATACGATAACCTTGTTAAGACGATTAATAAGCATTTGCCGCTCCTGCACCGCTATATTG
CGCTAAGAAAGAAAGTGCTTGAGCTTGATGAAGTGCATATCTATGACCTGTATACACCGCTTGTGAAAGATGCTGGGATG
AAGGTGACATACGAGGAAGCCAAAGATTACATGCTGAAAGGCCTTGCACCTTTAGGGGAAGAATATGCCTCTATCCTAAA
AGAAGGACTGGAAAACCGCTGGGTGGACGTTTACGAAAATAAAGGCAAACGCAATGGGGCTTATTCATCAGGAGCTTACG
GCACGAATCCGTATATTTTGATGAACTGGCATAATAACGTCAATAATCTCTTTACGCTCGTGCACGAGTTTGGACATTCC
GTACACAGCTACTATACGAGAAAGCACCAGCCTTATCCATATGGCAATTACAGCATCTTTGTCGCGGAAGTTGCCTCTAC
GACAAATGAAGCGCTCCTTGGCGAATATCTGCTGAACAATTTAGAGGATGAAAAACAGCGCTTATATATTCTCAACCATA
TGCTTGAGGGCTTCAGGGGAACGGTTTTCAGACAAACGATGTTCGCTGAATTTGAACATCTGATCCATACAAAGGCGCAA
GAAGGCGAGCCGCTTACACCTGAGCTTCTGACAAAGGTCTATTACGACCTGAATAAAAAGTATTTTGGAGACGGCATGGT
GATTGATAAGGAAATCGGCCTTGAATGGTCGCGTATTCCGCACTTCTATTACAATTACTATGTGTATCAGTATGCGACAG
GGTACAGCGCTGCCCAAGCATTAAGCAGCCAGATTTTGAAGGAAGGAAAGCCGGCGGTTGACCGTTATATTGACTTCCTG
AAAGCGGGAAGCTCACAATACCCGATTGATGTCCTGAAAAAAGCGGGTGTTGATATGACGTCTCCAGAGCCAATCGAAGC
CGCGTGCAAAATGTTTGAAGAAAAACTTGATGAAATGGAAGAGCTGCTGATGAAAGTCAAGCAGTCTTAA

Domains

Predicted by InterProScan.

Peptidase family M3 (Peptidase_M3)

(211-590)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

48.99

97.537

0.478

Multiple sequence alignment