Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   ES968_RS02430 Genome accession   NZ_CP035395
Coordinates   489668..490102 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain SRCM103697     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 484668..495102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES968_RS02400 (ES968_02400) ydaD 485315..486175 (+) 861 WP_003246648.1 SDR family oxidoreductase -
  ES968_RS02405 (ES968_02405) lyxE 486191..486694 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  ES968_RS02410 (ES968_02410) ydaF 486782..487333 (+) 552 WP_014478866.1 GNAT family protein -
  ES968_RS02415 (ES968_02415) ydaG 487411..487833 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  ES968_RS02420 (ES968_02420) amj 488339..489148 (+) 810 WP_014478868.1 lipid II flippase Amj -
  ES968_RS02425 (ES968_02425) ydzA 489193..489483 (-) 291 WP_014478869.1 DUF3817 domain-containing protein -
  ES968_RS02430 (ES968_02430) lrpC 489668..490102 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  ES968_RS02435 (ES968_02435) topB 490167..492350 (+) 2184 WP_076458431.1 DNA topoisomerase III -
  ES968_RS02440 (ES968_02440) mutT 492463..492912 (+) 450 WP_017697018.1 8-oxo-dGTP diphosphatase MutT -
  ES968_RS02445 (ES968_02445) poxB 492979..494703 (+) 1725 WP_129134184.1 pyruvate oxidase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=298988 ES968_RS02430 WP_003246585.1 489668..490102(+) (lrpC) [Bacillus subtilis strain SRCM103697]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=298988 ES968_RS02430 WP_003246585.1 489668..490102(+) (lrpC) [Bacillus subtilis strain SRCM103697]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATTAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment