Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DPF99_RS10845 Genome accession   NZ_CP030070
Coordinates   1843413..1844009 (+) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain IA565     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1838413..1849009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DPF99_RS10820 (DPF99_11160) - 1838605..1840362 (-) 1758 WP_016529118.1 AAA family ATPase -
  DPF99_RS10825 (DPF99_11165) matP 1840548..1841000 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  DPF99_RS10830 (DPF99_11170) ompA 1841132..1842202 (-) 1071 WP_002898408.1 porin OmpA -
  DPF99_RS10835 (DPF99_11175) sulA 1842555..1843064 (-) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  DPF99_RS10845 (DPF99_11185) sxy/tfoX 1843413..1844009 (+) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  DPF99_RS10850 (DPF99_11190) yccS 1844023..1846158 (-) 2136 WP_002898422.1 YccS family putative transporter -
  DPF99_RS10855 (DPF99_11195) - 1846176..1846622 (-) 447 WP_002898425.1 YccF domain-containing protein -
  DPF99_RS10860 (DPF99_11200) helD 1846747..1848801 (+) 2055 WP_032416944.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=298896 DPF99_RS10845 WP_004179217.1 1843413..1844009(+) (sxy/tfoX) [Klebsiella pneumoniae strain IA565]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=298896 DPF99_RS10845 WP_004179217.1 1843413..1844009(+) (sxy/tfoX) [Klebsiella pneumoniae strain IA565]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAAAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment