Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DOZ91_RS15055 Genome accession   NZ_CP030063
Coordinates   3208680..3210068 (-) Length   462 a.a.
NCBI ID   WP_127777540.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain ZB201705     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3203680..3215068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOZ91_RS15035 (DOZ91_15370) ispF 3205091..3205570 (-) 480 WP_034305078.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  DOZ91_RS15040 (DOZ91_15375) ispD 3205585..3206277 (-) 693 WP_127777539.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  DOZ91_RS15045 (DOZ91_15380) - 3206299..3207378 (-) 1080 WP_053537037.1 PIN/TRAM domain-containing protein -
  DOZ91_RS15050 (DOZ91_15385) disA 3207604..3208677 (-) 1074 WP_034305085.1 DNA integrity scanning diadenylate cyclase DisA -
  DOZ91_RS15055 (DOZ91_15390) radA 3208680..3210068 (-) 1389 WP_127777540.1 DNA repair protein RadA Machinery gene
  DOZ91_RS15060 (DOZ91_15395) clpC 3210267..3212708 (-) 2442 WP_053537035.1 ATP-dependent protease ATP-binding subunit ClpC -
  DOZ91_RS15065 (DOZ91_15400) - 3212838..3213914 (-) 1077 WP_127777541.1 protein arginine kinase -
  DOZ91_RS15070 (DOZ91_15405) - 3213911..3214462 (-) 552 WP_127777542.1 UvrB/UvrC motif-containing protein -
  DOZ91_RS15075 (DOZ91_15410) - 3214484..3214945 (-) 462 WP_034305095.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 50230.89 Da        Isoelectric Point: 8.2388

>NTDB_id=298850 DOZ91_RS15055 WP_127777540.1 3208680..3210068(-) (radA) [Peribacillus frigoritolerans strain ZB201705]
MAVKKKTKFMCQSCGYESAKWMGKCPGCGEWNKMVEETEIVKPARKGAFTHSEVRVSGEREKAAPITTIQSEKEPRIKTD
LMELNRALGGGIVQGSLVLIGGDPGIGKSTLLLQVSSQLAHKQKKVLYISGEESVKQTKLRADRLGTMSENLFVYSETDM
DYIQQAITDVKPDLVIIDSIQTVYHSEVTSAPGSVSQVRECTASLMRIAKTNGIAIFIVGHVTKEGAIAGPRLLEHMVDT
VLYFEGERHHTYRIIRAVKNRFGSTNEMGIFEMKEHGLEEVANPSEIFLEERSQGASGSTVVASMEGTRPVLVEIQALIS
PTSFGNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAISIASSFRDKPTNPADCIIGE
VGLTGEVRRVSRIEQRVQEAAKLGFERVIIPANNIGGWTAPKGIKVIGVSSVSEALKQSLGG

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=298850 DOZ91_RS15055 WP_127777540.1 3208680..3210068(-) (radA) [Peribacillus frigoritolerans strain ZB201705]
ATGGCTGTAAAAAAGAAAACAAAATTTATGTGTCAGTCTTGTGGGTATGAGTCCGCGAAATGGATGGGGAAATGCCCAGG
CTGCGGTGAATGGAACAAAATGGTCGAGGAAACCGAAATCGTTAAACCTGCAAGAAAAGGAGCTTTTACCCATTCAGAGG
TTAGAGTTTCCGGGGAACGGGAGAAGGCAGCACCCATAACGACTATTCAATCAGAAAAAGAACCACGCATTAAGACGGAT
CTAATGGAATTGAATCGTGCTCTTGGGGGCGGGATCGTGCAGGGATCACTTGTATTGATCGGAGGGGACCCGGGTATCGG
TAAGTCCACCCTGCTTCTACAGGTATCATCCCAATTGGCGCATAAACAGAAAAAAGTGCTTTATATATCAGGTGAAGAAT
CAGTCAAGCAGACCAAATTGAGAGCGGACCGGCTTGGGACCATGTCGGAAAATCTATTCGTTTATTCTGAAACCGATATG
GACTATATCCAACAGGCAATTACAGACGTTAAACCGGATTTGGTCATTATTGACTCGATTCAAACGGTTTACCATTCGGA
GGTTACATCTGCCCCGGGAAGCGTTTCACAAGTGAGGGAATGCACAGCCTCACTCATGCGCATTGCTAAAACGAACGGGA
TCGCGATTTTTATCGTCGGTCACGTTACAAAAGAAGGGGCCATTGCGGGACCACGGCTGCTTGAGCACATGGTTGATACC
GTTTTATATTTTGAAGGGGAAAGACACCATACATATCGAATTATACGTGCGGTTAAAAATCGCTTTGGTTCGACGAATGA
GATGGGTATTTTTGAAATGAAAGAACATGGATTGGAAGAGGTGGCGAATCCATCGGAAATTTTCCTTGAAGAACGGTCGC
AAGGAGCTTCGGGGTCCACAGTCGTCGCATCCATGGAGGGCACAAGGCCGGTGCTTGTTGAAATTCAAGCATTGATTTCT
CCTACGAGTTTTGGCAATCCGAGGCGGATGGCCACGGGAATTGACCACAATCGAGTTTCGCTTTTAATGGCTGTCCTGGA
AAAGAGAGTGGGCTTGCTGCTCCAAAACCAAGATGCGTATTTAAAGGTTGCTGGCGGTGTCAAGCTGGATGAACCGGCAA
TTGACCTCGCTGTCGCAATAAGCATTGCATCAAGCTTCCGTGATAAACCAACAAACCCTGCCGATTGCATCATTGGTGAA
GTAGGGCTGACTGGTGAAGTGAGAAGGGTGTCACGAATTGAACAAAGGGTGCAGGAAGCAGCGAAATTAGGGTTTGAGCG
GGTTATAATACCGGCTAATAATATAGGAGGGTGGACCGCGCCGAAAGGTATTAAGGTCATTGGTGTTTCATCGGTTTCGG
AGGCTCTTAAACAATCGTTAGGGGGTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(369-434)

AAA domain (AAA_25)

(77-226)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

78.043

99.567

0.777
  radA Streptococcus mitis NCTC 12261

62.198

98.485

0.613
  radA Streptococcus mitis SK321

61.978

98.485

0.61
  radA Streptococcus pneumoniae TIGR4

61.758

98.485

0.608
  radA Streptococcus pneumoniae R6

61.758

98.485

0.608
  radA Streptococcus pneumoniae Rx1

61.758

98.485

0.608
  radA Streptococcus pneumoniae D39

61.758

98.485

0.608

Multiple sequence alignment