Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   DOZ91_RS09490 Genome accession   NZ_CP030063
Coordinates   2016479..2018296 (-) Length   605 a.a.
NCBI ID   WP_054397173.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain ZB201705     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2011479..2023296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOZ91_RS09465 (DOZ91_09690) - 2011819..2012439 (-) 621 WP_034314484.1 GTP pyrophosphokinase family protein -
  DOZ91_RS09470 (DOZ91_09695) - 2012759..2013337 (+) 579 WP_127777097.1 CYTH domain-containing protein -
  DOZ91_RS09475 (DOZ91_09700) - 2013396..2014001 (+) 606 Protein_1915 lytic transglycosylase domain-containing protein -
  DOZ91_RS09480 (DOZ91_09705) - 2014265..2014666 (+) 402 WP_127778636.1 globin -
  DOZ91_RS09485 (DOZ91_09710) - 2014690..2015556 (+) 867 WP_240660965.1 ClpXP adapter SpxH family protein -
  DOZ91_RS09490 (DOZ91_09715) pepF 2016479..2018296 (-) 1818 WP_054397173.1 oligoendopeptidase F Regulator
  DOZ91_RS09495 (DOZ91_09720) - 2018467..2019675 (-) 1209 WP_164855022.1 competence protein CoiA family protein -
  DOZ91_RS09500 (DOZ91_09725) cls 2019774..2021282 (-) 1509 WP_127777100.1 cardiolipin synthase -
  DOZ91_RS09505 (DOZ91_09730) mecA 2021372..2022040 (-) 669 WP_034314498.1 adaptor protein MecA -
  DOZ91_RS09510 (DOZ91_09735) spxA 2022535..2022930 (-) 396 WP_034314502.1 transcriptional regulator SpxA -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69869.24 Da        Isoelectric Point: 4.7159

>NTDB_id=298840 DOZ91_RS09490 WP_054397173.1 2016479..2018296(-) (pepF) [Peribacillus frigoritolerans strain ZB201705]
MAQETKTNTLPSRSEIAPEDTWRLEDIFATEEDWEAAFKAVKEDLKKAEAHKGTLGESAEKLFAALQLQDEVFEKLGKVY
SYSHMRNDQDTTNPFYQGMEDRAKALYAQAAAAFSYMVPELLSIDESKVEGFLEEKEELKLYKHSLEEINLQRPHILSAE
QEELLAQASEVLDASGNTFGMLNNADLKFPTIKDEEGNEVEITHGRYIRFLESEDRRVREEAFKGVYSKYGEFRNTFAST
LSGEVKNHNFNATVRKYDSARQAALSNNNIPETVYDNLVKTVNDNLPLLHRYLDLRKKVLELDELHMYDLFTPLVKEVKM
DVTYDEAKDYVLKGLAPLGEDYLNVLKEGFENRWVDVHENKGKRSGAYSSGTYGTNPYILMNWQNNVNNLFTLVHEFGHS
VHSYYTRKHQPYPYGNYSIFVAEVASTCNENLLNDYLLNSIEDEKKRIYLLNHYLEGFRGTLFRQTMFAEFEHTIHLKSQ
NGEALTADMLTKEYYELNKKYFGENVTIDEEIGLEWARIPHFYYNYYVYQYATGISAATALSKQILEEGEPAVKRYLEFL
KSGSSDYPIEVLKKAGVDMTKAEPVQEAMNVFEEKLNELEELLNK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=298840 DOZ91_RS09490 WP_054397173.1 2016479..2018296(-) (pepF) [Peribacillus frigoritolerans strain ZB201705]
ATGGCACAGGAAACAAAAACGAATACATTACCTTCAAGAAGTGAAATAGCTCCTGAAGATACGTGGAGACTGGAAGATAT
CTTCGCAACCGAGGAAGATTGGGAAGCTGCCTTCAAAGCGGTAAAGGAAGACCTCAAGAAAGCGGAGGCGCATAAAGGGA
CATTGGGAGAAAGCGCAGAAAAGTTATTTGCGGCCCTCCAACTTCAAGATGAGGTTTTCGAGAAGCTGGGGAAAGTTTAT
TCTTATTCACATATGCGCAATGATCAAGATACAACCAATCCATTTTATCAAGGGATGGAGGATCGGGCAAAAGCTTTATA
CGCACAGGCAGCGGCTGCGTTTTCATATATGGTTCCTGAACTATTGAGTATTGACGAAAGTAAAGTGGAAGGGTTTTTGG
AAGAAAAAGAAGAATTGAAATTATATAAACATTCTTTAGAGGAAATTAATCTTCAGAGACCCCATATCCTATCAGCAGAG
CAGGAAGAACTATTGGCGCAGGCATCAGAAGTACTCGATGCATCGGGCAATACTTTCGGTATGCTTAACAATGCCGATCT
TAAATTCCCGACCATCAAGGATGAAGAGGGAAATGAAGTGGAAATTACTCACGGAAGGTATATCAGATTTCTTGAGAGTG
AAGATCGCCGTGTACGTGAGGAGGCATTTAAAGGGGTATACAGCAAGTACGGGGAGTTCCGTAATACATTTGCTTCAACC
CTGTCAGGTGAGGTGAAAAACCACAACTTCAATGCCACGGTTCGAAAATATGATTCAGCACGCCAAGCGGCGTTAAGTAA
TAATAACATTCCGGAGACCGTATACGATAATCTCGTTAAAACGGTCAACGACAACTTGCCATTACTGCACCGTTATCTTG
ATTTACGTAAAAAAGTACTGGAATTAGATGAACTTCATATGTATGATCTATTCACTCCTCTTGTTAAAGAAGTGAAGATG
GACGTGACATATGACGAGGCCAAAGATTATGTCCTTAAAGGTCTTGCTCCGCTAGGGGAGGACTATTTGAACGTTTTGAA
AGAGGGATTTGAAAACCGTTGGGTCGATGTGCATGAGAACAAAGGGAAACGAAGCGGTGCCTATTCTTCGGGTACATACG
GGACGAACCCTTATATTCTAATGAACTGGCAAAATAACGTCAATAACTTATTCACGCTCGTTCATGAGTTTGGGCATTCG
GTCCATAGCTACTATACACGTAAACATCAGCCATATCCATACGGGAATTATTCGATATTTGTAGCGGAAGTTGCATCGAC
TTGTAATGAAAACCTGTTGAATGATTATTTACTGAATTCAATCGAAGATGAAAAGAAACGCATCTATTTACTGAACCATT
ACCTGGAAGGTTTCCGTGGCACATTGTTCCGACAAACGATGTTTGCAGAGTTTGAACATACCATTCATTTAAAGTCTCAA
AATGGGGAAGCATTGACGGCGGATATGCTTACTAAGGAATATTATGAGCTGAACAAGAAATACTTTGGCGAGAACGTGAC
CATTGATGAAGAAATCGGTTTGGAATGGGCTCGTATTCCACACTTCTACTATAATTACTATGTTTATCAATATGCAACTG
GAATCAGTGCAGCAACTGCATTGAGCAAGCAAATCCTTGAAGAAGGAGAGCCTGCTGTCAAAAGGTATCTGGAGTTCTTG
AAATCAGGAAGTTCCGATTATCCGATTGAAGTACTTAAAAAGGCCGGCGTAGATATGACAAAAGCCGAGCCTGTACAAGA
AGCCATGAATGTATTCGAAGAGAAATTAAATGAGTTGGAAGAACTTTTGAATAAATAG

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-590)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.673

98.182

0.498

Multiple sequence alignment