Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ES965_RS19025 Genome accession   NZ_CP035391
Coordinates   3654837..3655970 (-) Length   377 a.a.
NCBI ID   WP_064671479.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103689     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3649837..3660970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES965_RS18985 (ES965_18985) ywnA 3649976..3650377 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  ES965_RS18990 (ES965_18990) ureC 3650512..3652221 (-) 1710 WP_129092769.1 urease subunit alpha -
  ES965_RS18995 (ES965_18995) ureB 3652218..3652592 (-) 375 WP_003227726.1 urease subunit beta -
  ES965_RS19000 (ES965_19000) ureA 3652589..3652906 (-) 318 WP_003227724.1 urease subunit gamma -
  ES965_RS21605 - 3653101..3653259 (-) 159 WP_124059325.1 hypothetical protein -
  ES965_RS22005 - 3653360..3653428 (-) 69 WP_144486809.1 hypothetical protein -
  ES965_RS21610 - 3653561..3653729 (-) 169 Protein_3674 urea ABC transporter substrate-binding protein -
  ES965_RS19015 (ES965_19015) csbD 3653942..3654130 (-) 189 WP_003227718.1 stress response protein CsbD -
  ES965_RS19020 (ES965_19020) - 3654203..3654682 (-) 480 WP_003244390.1 hypothetical protein -
  ES965_RS19025 (ES965_19025) rapC 3654837..3655970 (-) 1134 WP_064671479.1 response regulator aspartate phosphatase RapB Regulator
  ES965_RS19030 (ES965_19030) moaA 3656163..3657188 (-) 1026 WP_015483814.1 GTP 3',8-cyclase MoaA -
  ES965_RS19035 (ES965_19035) fdhD 3657204..3657992 (-) 789 WP_129092770.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  ES965_RS19040 (ES965_19040) - 3658225..3658386 (-) 162 WP_021480806.1 hypothetical protein -
  ES965_RS19045 (ES965_19045) ywmD 3658481..3659155 (-) 675 WP_003243553.1 VWA domain-containing protein -
  ES965_RS19050 (ES965_19050) - 3659208..3659348 (-) 141 WP_129092771.1 hypothetical protein -
  ES965_RS19055 (ES965_19055) ywmC 3659478..3660161 (-) 684 WP_129092772.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45083.22 Da        Isoelectric Point: 4.7975

>NTDB_id=298797 ES965_RS19025 WP_064671479.1 3654837..3655970(-) (rapC) [Bacillus subtilis strain SRCM103689]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSQAAMRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLDMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYREAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=298797 ES965_RS19025 WP_064671479.1 3654837..3655970(-) (rapC) [Bacillus subtilis strain SRCM103689]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAGGAAGAAATTGATCTAGATATAGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCACGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTACAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTAATCGGATCAGCCCTTTATAATATTGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCCAAGCCGCGATGCGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGGATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTACGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCCTATTTCAGTCA
TCGCGAACAATATAGAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGCT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.368

100

0.427
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424

Multiple sequence alignment