Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   ES965_RS10480 Genome accession   NZ_CP035391
Coordinates   2069633..2071408 (-) Length   591 a.a.
NCBI ID   WP_124058264.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103689     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2064633..2076408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES965_RS10460 (ES965_10460) desE 2065017..2066075 (+) 1059 WP_041351144.1 fatty acid desaturase DesE -
  ES965_RS10465 (ES965_10465) desK 2066195..2067307 (+) 1113 WP_015251908.1 two-component sensor histidine kinase DesK -
  ES965_RS10470 (ES965_10470) desR 2067326..2067925 (+) 600 WP_004399356.1 two-component system response regulator DesR -
  ES965_RS10475 (ES965_10475) walN 2068522..2069385 (-) 864 WP_003231267.1 3D domain-containing protein -
  ES965_RS10480 (ES965_10480) recQ 2069633..2071408 (-) 1776 WP_124058264.1 DNA helicase RecQ Machinery gene
  ES965_RS10495 (ES965_10495) azoJ 2071973..2072599 (-) 627 WP_124058266.1 FMN-dependent NADH-azoreductase AzoJ -
  ES965_RS10500 (ES965_10500) stpP 2072750..2073241 (-) 492 WP_003231259.1 TraR/DksA family transcriptional regulator -
  ES965_RS10505 (ES965_10505) - 2073316..2073648 (-) 333 WP_024573296.1 hypothetical protein -
  ES965_RS10510 (ES965_10510) - 2073726..2073953 (+) 228 WP_015383862.1 hypothetical protein -
  ES965_RS10515 (ES965_10515) yocM 2073940..2074416 (-) 477 WP_003231255.1 salt stress-responsive protein YocM -
  ES965_RS10520 (ES965_10520) - 2074483..2074746 (+) 264 WP_004399338.1 hypothetical protein -
  ES965_RS10525 (ES965_10525) - 2074751..2074984 (+) 234 WP_003231251.1 hypothetical protein -
  ES965_RS10530 (ES965_10530) yozO 2075071..2075415 (-) 345 WP_003220141.1 PH domain-containing protein -
  ES965_RS10535 (ES965_10535) yozC 2075773..2075976 (-) 204 WP_003231245.1 DUF6501 family protein -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 67320.81 Da        Isoelectric Point: 6.2899

>NTDB_id=298740 ES965_RS10480 WP_124058264.1 2069633..2071408(-) (recQ) [Bacillus subtilis strain SRCM103689]
MLHRAQSLLAHYFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIVISPLISLMKDQVDALEE
AGINAAYINSTQSNQEIYERLNGLKEGAYKLFYITPERLTSTEFIRILQGIDVPLVAIDEAHCISQWGHDFRPSYRNIEI
LFRELHDKPVIMALTATATPEVHDDICKQLHIQKENTVYTGFSRDNLTFKVVKGENKDRFIDEYVQNNRHEAGIVYTATR
KEADRIYERLKRNQVRAGRYHGGLADDVRKEQQERFLNDELQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGR
AGRDGLASECVLLFSPQDIMVQRFLIEQSEHEEKQKQDLKKLRQIVDYCHTEDCLQRFILMYFGEKEPDACGQCGNCTDI
RAAHDVTREAQMVLSCIIRMKERFGKTMVAQVLAGSKNKKVLENGFSDLSTYGILKHQSVGEISDFIEFLISDDFIRMSD
GTFPTLFVSSKGRNVLKGELSVARKEALKAAAITENDELFERLRMVRKEIAAEQGVPPFVVFSDQTLKEMSGKQPVNDDE
LLSIKGVGEQKRAKYGRLFLQEIQAYARMTD

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=298740 ES965_RS10480 WP_124058264.1 2069633..2071408(-) (recQ) [Bacillus subtilis strain SRCM103689]
ATGTTACATAGAGCCCAATCCCTTCTGGCTCATTATTTTGGTTATGAGAAGTTTCGGAGCGGCCAAGATGAAGCGATCCG
CTTGGTGACGGAAGCGAGGCAAAATACGGCCTGCATTATGCCGACGGGAGGCGGCAAATCGATTTGCTATCAAATTCCGG
CATTAATGTTTGAAGGGACGACGATCGTCATTTCACCGTTGATTTCCTTGATGAAGGATCAAGTTGATGCGTTAGAAGAA
GCGGGGATTAACGCCGCCTACATTAACAGCACACAATCCAATCAGGAAATATATGAGAGGCTGAACGGACTCAAAGAAGG
GGCTTATAAGCTTTTTTACATTACACCAGAGCGACTAACGTCCACAGAGTTTATCCGGATTTTGCAGGGCATAGATGTTC
CTCTGGTCGCAATAGACGAGGCGCATTGTATTTCTCAATGGGGCCATGATTTCAGGCCAAGCTACAGGAATATTGAAATC
TTGTTCCGTGAATTACACGACAAGCCTGTCATCATGGCGTTAACAGCAACAGCCACACCCGAGGTTCATGATGATATTTG
CAAACAGCTGCATATTCAAAAAGAAAACACGGTATATACCGGATTTTCCCGAGATAATTTAACCTTTAAAGTAGTAAAAG
GAGAAAATAAAGATCGGTTTATAGACGAATATGTACAAAACAACAGGCATGAAGCAGGAATTGTCTATACAGCGACCAGA
AAAGAAGCTGATCGGATATATGAGAGATTGAAACGAAATCAGGTCAGGGCAGGCCGGTATCATGGAGGTTTGGCTGATGA
TGTGAGAAAAGAGCAGCAGGAAAGGTTTCTTAATGATGAGCTTCAAGTGATGGTGGCAACCTCTGCTTTTGGAATGGGTA
TTGATAAATCAAATATCAGATTTGTTCTGCATGCACAAATTCCGAAAGATATGGAAAGCTATTATCAAGAGGCAGGACGA
GCTGGACGGGACGGTCTTGCCAGTGAATGTGTTCTCCTGTTTTCACCGCAGGATATTATGGTGCAGCGCTTCTTAATTGA
GCAATCAGAACATGAAGAGAAACAAAAGCAGGATTTAAAAAAGCTGAGACAAATTGTCGACTACTGTCATACGGAAGATT
GTCTGCAGCGTTTTATCCTTATGTATTTCGGAGAAAAGGAGCCTGATGCGTGCGGACAGTGCGGAAACTGTACCGATATA
AGAGCGGCCCATGACGTGACGCGGGAGGCGCAAATGGTCTTATCCTGTATCATTCGTATGAAAGAACGGTTTGGCAAGAC
GATGGTTGCCCAGGTGCTTGCCGGCTCCAAAAATAAAAAAGTTCTTGAAAATGGCTTTTCAGACCTTTCAACATACGGGA
TATTAAAACACCAATCCGTTGGCGAAATCAGTGATTTTATCGAATTTCTTATTTCTGACGACTTCATCAGGATGTCAGAC
GGAACGTTTCCGACTCTTTTTGTCAGCAGTAAAGGAAGGAATGTGCTGAAAGGAGAATTATCAGTAGCGAGAAAAGAAGC
GTTAAAAGCGGCAGCGATTACTGAAAATGACGAGCTATTTGAACGATTGCGCATGGTTCGGAAAGAAATTGCGGCTGAGC
AGGGTGTTCCGCCATTTGTTGTTTTCTCTGACCAAACGTTAAAAGAAATGTCAGGAAAACAGCCCGTAAATGATGATGAA
CTTTTGTCTATAAAAGGAGTCGGAGAACAAAAAAGAGCAAAATACGGCCGGCTTTTTTTACAAGAAATACAAGCTTATGC
AAGGATGACAGACTAA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(21-182)

Helicase conserved C-terminal domain (Helicase_C)

(218-324)

HRDC domain (HRDC)

(518-583)

RecQ zinc-binding (RecQ_Zn_bind)

(336-398)

RQC domain (RQC)

(404-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

99.323

100

0.993