Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   ES965_RS09120 Genome accession   NZ_CP035391
Coordinates   1743920..1744351 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain SRCM103689     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1738920..1749351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES965_RS09100 (ES965_09100) spoVS 1739481..1739741 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  ES965_RS09105 (ES965_09105) tdh 1740007..1741050 (+) 1044 WP_124059862.1 L-threonine 3-dehydrogenase -
  ES965_RS09110 (ES965_09110) kbl 1741063..1742241 (+) 1179 WP_124059863.1 glycine C-acetyltransferase -
  ES965_RS09115 (ES965_09115) miaB 1742389..1743918 (+) 1530 WP_014664026.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  ES965_RS09120 (ES965_09120) ymcA 1743920..1744351 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  ES965_RS09125 (ES965_09125) cotE 1744613..1745158 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  ES965_RS09130 (ES965_09130) hexA 1745291..1747867 (+) 2577 WP_124059864.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=298733 ES965_RS09120 WP_003231834.1 1743920..1744351(+) (ymcA) [Bacillus subtilis strain SRCM103689]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=298733 ES965_RS09120 WP_003231834.1 1743920..1744351(+) (ymcA) [Bacillus subtilis strain SRCM103689]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATCTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAGGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1