Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   DOU32_RS04090 Genome accession   NZ_CP030045
Coordinates   784900..786573 (+) Length   557 a.a.
NCBI ID   WP_085345116.1    Uniprot ID   -
Organism   Enterococcus faecalis strain C54     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 779900..791573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOU32_RS04060 (DOU32_04085) - 780572..780802 (+) 231 WP_002355878.1 exodeoxyribonuclease VII small subunit -
  DOU32_RS04065 (DOU32_04090) - 780802..781683 (+) 882 WP_002355879.1 polyprenyl synthetase family protein -
  DOU32_RS04070 (DOU32_04095) - 781697..782512 (+) 816 WP_002355880.1 TlyA family RNA methyltransferase -
  DOU32_RS04075 (DOU32_04100) - 782927..783436 (+) 510 WP_002358879.1 matrixin family metalloprotease -
  DOU32_RS04080 (DOU32_04105) - 783441..784301 (+) 861 WP_010706683.1 hypothetical protein -
  DOU32_RS04085 (DOU32_04110) - 784433..784882 (+) 450 WP_002358881.1 arginine repressor -
  DOU32_RS04090 (DOU32_04115) recN 784900..786573 (+) 1674 WP_085345116.1 DNA repair protein RecN Machinery gene
  DOU32_RS14755 - 786664..786774 (-) 111 WP_002383399.1 DUF4044 domain-containing protein -
  DOU32_RS04100 (DOU32_04125) - 786842..787807 (-) 966 WP_002383400.1 magnesium transporter CorA family protein -
  DOU32_RS04105 (DOU32_04130) - 788052..788444 (+) 393 WP_002383401.1 DUF3397 domain-containing protein -
  DOU32_RS04115 (DOU32_04140) mraZ 788678..789163 (+) 486 WP_002383402.1 division/cell wall cluster transcriptional repressor MraZ -
  DOU32_RS04120 (DOU32_04145) rsmH 789178..790134 (+) 957 WP_002355891.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  DOU32_RS04125 (DOU32_04150) ftsL 790151..790558 (+) 408 WP_002358883.1 cell division protein FtsL -

Sequence

Protein


Download         Length: 557 a.a.        Molecular weight: 62608.01 Da        Isoelectric Point: 4.5769

>NTDB_id=298716 DOU32_RS04090 WP_085345116.1 784900..786573(+) (recN) [Enterococcus faecalis strain C54]
MLQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRGSSDYIRQGANKCTLEGLFSMPKSQELKKLL
EELGIETEEDSLVIQRDISASGKNVCRVNGRIVNITNLKRIGEYLVDIHGQNEHQELMQSERHIDMLDEFGGKKLLAVKE
KYTQAYQEYRALEAKVRKRQKNEKEFAQRMDMLHFQSDEIASAQLVAGEEEQLLEERNKLNNFQKIADALTISYAALNGE
DDSSLDKIGTSMNELASIESLDPEYKSLSDTVQNAYYLLQEASGDLSRLIDGLELDEGRLNEVENRLELIRQMKRKYGDS
IETILSYYEEITKELAEADFLEGGTGDLEALLAEKQQAAHQQALALRKERKHLAKELEQQILTELKELYLERTEFEVRFT
ELEHLQENGLDGVEFYITTNPGEPLKPLVRVASGGELSRVMLAMKTIFSQTQGITSIVFDEVDTGVSGRVAQAIADKIYQ
ISENSQVLCITHLPQVAAVADEHYFIEKEIVAGRTETSVRILSEKERVNEIARMLAGSEITKLTIEHAQELLAMAKK

Nucleotide


Download         Length: 1674 bp        

>NTDB_id=298716 DOU32_RS04090 WP_085345116.1 784900..786573(+) (recN) [Enterococcus faecalis strain C54]
ATGTTACAAGAACTTTCCGTGAAAAATTTTGCGATTATCTCTTCGTTACAATTAGAGTTTCAAATGGGTATGACCGTTTT
AACGGGAGAAACGGGTGCGGGGAAATCCATCATTATTGATGCAATGGGATTACTCACAGGCGGACGCGGCTCCAGTGACT
ATATTCGTCAAGGAGCAAATAAATGCACCTTAGAAGGACTTTTTTCAATGCCGAAAAGTCAAGAATTAAAGAAATTATTA
GAAGAATTAGGTATTGAAACAGAAGAAGATTCTTTAGTGATTCAACGAGATATTTCCGCTTCTGGTAAAAATGTTTGCCG
TGTCAACGGACGGATTGTCAACATTACTAATTTAAAAAGAATTGGGGAATATTTAGTAGATATTCATGGCCAAAACGAAC
ATCAAGAATTGATGCAAAGTGAACGCCATATTGATATGTTAGATGAATTTGGTGGGAAAAAACTTTTAGCAGTCAAAGAA
AAATATACACAGGCGTATCAAGAGTATCGCGCACTCGAAGCCAAAGTCAGAAAGCGACAAAAAAATGAAAAAGAATTTGC
CCAAAGAATGGACATGCTTCATTTTCAAAGTGATGAAATTGCTAGTGCACAGTTAGTCGCTGGCGAAGAAGAACAATTGT
TAGAAGAACGCAATAAACTGAACAATTTTCAAAAGATTGCTGATGCACTGACGATTAGTTATGCCGCGCTAAATGGTGAA
GACGATAGTAGTTTGGATAAAATCGGAACAAGTATGAATGAACTCGCTTCGATTGAATCCCTTGATCCAGAATATAAATC
ATTGTCAGATACTGTTCAAAATGCTTACTACTTACTACAAGAAGCTAGTGGAGATCTTTCTAGGCTGATTGATGGCTTAG
AACTAGATGAAGGCCGCTTGAATGAAGTAGAAAATCGTTTGGAATTAATCCGTCAAATGAAGCGTAAATATGGCGATTCG
ATTGAAACGATTTTATCTTACTATGAAGAAATCACCAAAGAGTTAGCAGAGGCTGATTTTTTGGAAGGCGGTACAGGTGA
CTTAGAAGCGTTGCTTGCAGAGAAACAACAAGCGGCTCATCAACAAGCGTTAGCTTTACGAAAAGAACGAAAGCACCTAG
CCAAAGAGCTCGAACAACAAATTTTAACCGAATTAAAAGAACTATATTTGGAGCGAACGGAATTTGAAGTCCGCTTTACA
GAACTTGAGCATTTACAAGAAAATGGCTTAGACGGAGTAGAATTTTATATTACTACTAACCCAGGGGAACCATTAAAACC
GTTAGTTCGGGTGGCTTCTGGCGGAGAACTTTCGCGAGTGATGTTGGCTATGAAAACAATCTTTTCTCAAACGCAAGGGA
TCACTAGTATTGTTTTTGATGAAGTGGATACAGGAGTCAGTGGCCGTGTAGCACAGGCGATTGCCGATAAAATTTATCAA
ATTTCAGAAAATTCGCAGGTGTTGTGTATCACGCACTTGCCACAAGTGGCGGCCGTTGCCGATGAACATTATTTTATTGA
AAAAGAAATTGTGGCGGGTCGGACAGAAACAAGCGTCCGAATTTTATCTGAAAAAGAGCGAGTAAACGAAATTGCACGTA
TGCTCGCAGGAAGTGAAATTACGAAATTAACCATTGAACATGCACAAGAGCTGTTGGCGATGGCGAAAAAATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.691

100

0.501

Multiple sequence alignment