Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   MAE_RS10445 Genome accession   NC_010296
Coordinates   2160831..2162471 (-) Length   546 a.a.
NCBI ID   WP_012265542.1    Uniprot ID   B0JH64
Organism   Microcystis aeruginosa NIES-843     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2155831..2167471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MAE_RS35695 - 2156062..2156193 (+) 132 WP_261779241.1 hypothetical protein -
  MAE_RS10415 (MAE_23890) - 2156395..2157216 (+) 822 WP_002796723.1 hypothetical protein -
  MAE_RS27690 (MAE_23900) - 2157646..2158842 (-) 1197 WP_002797825.1 DUF4377 domain-containing protein -
  MAE_RS10430 (MAE_23910) - 2159106..2159450 (+) 345 WP_012265540.1 YbaB/EbfC family nucleoid-associated protein -
  MAE_RS10435 (MAE_23925) - 2159510..2160232 (+) 723 WP_197533167.1 pyridoxine 5'-phosphate synthase -
  MAE_RS10440 (MAE_23930) - 2160300..2160611 (+) 312 WP_002797828.1 MgPME-cyclase complex family protein -
  MAE_RS10445 (MAE_23940) comA 2160831..2162471 (-) 1641 WP_012265542.1 DUF655 domain-containing protein Machinery gene
  MAE_RS10450 (MAE_23950) - 2162819..2165245 (+) 2427 WP_002796722.1 dynamin-like GTPase family protein -
  MAE_RS10455 (MAE_23970) - 2165452..2166315 (+) 864 WP_012265544.1 formylglycine-generating enzyme family protein -
  MAE_RS10460 - 2166394..2166591 (+) 198 WP_316578595.1 hypothetical protein -
  MAE_RS10465 (MAE_23980) - 2166576..2166773 (-) 198 WP_002783098.1 hypothetical protein -
  MAE_RS10470 (MAE_23990) - 2166753..2167352 (+) 600 WP_012265546.1 Uma2 family endonuclease -

Sequence

Protein


Download         Length: 546 a.a.        Molecular weight: 61455.04 Da        Isoelectric Point: 9.6231

>NTDB_id=29871 MAE_RS10445 WP_012265542.1 2160831..2162471(-) (comA) [Microcystis aeruginosa NIES-843]
MWTKMAIDKLRLKKIRPMGQLGFLLGTVSLLGGCHSLNAIQNRPQPLPQDQYIQVYFNYNQAQGSNYTDPYRQINRPGDN
LEQVIIDNINSAKSSIDLAVQELRLPAIAQALVARQQQGIKVRVILENIYNKPIHSLAKNQEKSSDREQERYQNLFDLVD
LNRDGKLSAEEIAQRDAITILKKAGIPLIDDRADRSKGSGLMHHKFMVIDNYTTLISSANYTLSDIHGDFSNTQTVGNAN
HLLVINNPPLARVFQQEFNLMWGREDRPKFGLDKPQRKPQKIPIGNSSLTVKFSPDSTAYPWAITSNGLIGETLNKAEKS
VDLALFVFTEQPLANILARRHQKGIEIKALIDPSFAFRYYSEGLDLLGVALSNKCRYEPDNQPWQNPINTLGVPDLARGD
KLHHKFGLIDDKIVITGSHNWSRAANHQNDEALVIIDNPTVAAHFDREFQYLYRTAKLGLPETIKNRIEQDRKNCPQSVT
IKSDRLINLNTATKEELDSLPGISGKLAEKIIAARQQKPFTSLEDLDRVSGIGQGKISKLKGKVSW

Nucleotide


Download         Length: 1641 bp        

>NTDB_id=29871 MAE_RS10445 WP_012265542.1 2160831..2162471(-) (comA) [Microcystis aeruginosa NIES-843]
ATGTGGACAAAAATGGCAATAGATAAATTGAGATTAAAAAAAATTCGGCCTATGGGACAGTTGGGATTTTTGTTAGGAAC
AGTTTCTCTTTTGGGTGGCTGTCATTCTTTGAATGCTATCCAAAATCGTCCGCAACCCTTGCCCCAAGATCAATATATTC
AAGTCTATTTTAATTATAATCAGGCCCAGGGGTCAAATTATACCGATCCCTATCGCCAAATTAATCGCCCGGGGGATAAT
TTAGAACAGGTTATTATTGATAATATCAACTCGGCCAAAAGTTCGATCGATCTAGCAGTGCAAGAGTTACGTTTACCCGC
CATTGCTCAAGCTTTAGTTGCTCGTCAGCAGCAGGGAATTAAAGTTAGGGTTATCCTCGAAAATATTTACAATAAACCTA
TTCATAGTTTAGCCAAAAACCAAGAAAAATCAAGCGATCGAGAACAGGAACGTTATCAAAACCTTTTTGACTTAGTTGAT
CTAAATCGAGATGGTAAATTAAGTGCGGAGGAAATCGCCCAAAGAGATGCAATTACTATCCTCAAAAAAGCTGGTATTCC
CCTAATTGATGATAGGGCAGATCGCTCAAAAGGTAGCGGTTTAATGCACCATAAATTCATGGTTATTGATAATTACACTA
CTTTAATCAGTTCAGCTAACTATACCTTAAGTGATATTCATGGAGACTTTTCTAATACCCAAACTGTCGGGAATGCCAAT
CACTTATTAGTCATTAATAATCCCCCACTAGCTAGAGTTTTTCAACAAGAATTTAATCTGATGTGGGGAAGGGAAGATCG
GCCTAAATTTGGGTTAGATAAACCCCAAAGAAAACCGCAAAAAATTCCTATCGGTAATAGTAGTCTGACGGTCAAATTTT
CCCCCGATTCTACCGCTTATCCCTGGGCAATTACTAGCAATGGTCTGATCGGTGAAACTTTAAATAAAGCTGAAAAATCC
GTGGATTTAGCCCTGTTTGTCTTTACGGAACAGCCTCTAGCTAATATTCTCGCCAGACGACATCAAAAAGGGATAGAAAT
TAAAGCTTTAATTGATCCTAGTTTTGCCTTCCGATACTATAGCGAAGGATTAGATTTATTAGGAGTTGCTCTCAGTAATA
AATGTCGTTATGAACCAGATAATCAGCCTTGGCAAAACCCAATTAATACTCTAGGAGTTCCCGATCTAGCCCGGGGAGAT
AAATTACACCATAAATTCGGTTTAATCGATGATAAAATTGTGATTACTGGTTCTCATAATTGGTCAAGAGCCGCTAACCA
TCAAAACGATGAAGCTTTAGTTATTATCGATAATCCCACCGTTGCCGCTCATTTCGATCGAGAATTTCAATATCTTTACC
GTACCGCTAAATTAGGACTGCCGGAAACTATTAAAAATCGGATCGAACAGGATAGAAAAAACTGCCCCCAATCTGTAACA
ATTAAAAGCGATCGCTTAATTAATTTAAACACCGCCACCAAAGAAGAACTAGATAGTTTACCCGGTATCAGTGGCAAATT
AGCCGAAAAAATTATCGCTGCCAGGCAACAAAAACCCTTTACTTCCCTAGAAGATTTGGATCGAGTATCGGGAATCGGTC
AGGGAAAAATTAGCAAGCTCAAAGGCAAAGTCAGCTGGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(485-544)

PLD-like domain (PLDc_2)

(312-452)

PLD-like domain (PLDc_2)

(85-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B0JH64

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

52.158

97.619

0.509

Multiple sequence alignment