Detailed information NTG0298663

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: DN752_RS11660
• Genome accession: NZ_CP030041
• Coordinates: 3008709..3010085 (-)
• Length: 458 a.a.
• NCBI ID: WP_112784105.1
• Uniprot ID: A0A2Z4IJM6
• Organism: Echinicola strongylocentroti strain MEBiC08714
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3003709..3015085

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DN752_RS11645 (DN752_11645)	-	3005007..3006587 (-)	1581	WP_112784102.1	McrB family protein	-
DN752_RS11650 (DN752_11650)	-	3006750..3007406 (+)	657	WP_112784103.1	HAD family phosphatase	-
DN752_RS11655 (DN752_11655)	-	3007487..3007909 (-)	423	WP_112784104.1	secondary thiamine-phosphate synthase enzyme YjbQ	-
DN752_RS11660 (DN752_11660)	radA	3008709..3010085 (-)	1377	WP_112784105.1	DNA repair protein RadA	Machinery gene
DN752_RS11665 (DN752_11665)	polA	3010261..3013077 (-)	2817	WP_112784106.1	DNA polymerase I	-

Sequence

Protein

• Length: 458 a.a.
• Molecular weight: 50358.67 Da
• Isoelectric Point: 6.1971

>NTDB_id=298663 DN752_RS11660 WP_112784105.1 3008709..3010085(-) (radA) [Echinicola strongylocentroti strain MEBiC08714]
MPKIKTAYFCQNCGAQSPKWVGKCPACGEWNTFVEEVIHKEENARGSWKQGSEKNKRSNSPRKLHEINYEEHPRLVTEDA
ELDRVLGGGIVPGSLTLIGGEPGIGKSTLMLQIALILNQTSVLYVSGEESESQIKMRADRMQYHSENCFVLSETNTQVIF
QQIEALKPEVLVIDSIQTLHSKHVESAAGSVSQVRECTAELMKFAKETGTPVFLIGHITKDGSIAGPKILEHMVDTVLQF
EGDRHLSYRILRTSKNRFGSTNELGIYEMRAEGLRGVANPSEILLSQREEVLNGVAIGAMLEGNRPLLIEIQSLISPATY
GTPQRSSTGHDSKRLNMLLAVLEKRGGMRLGQQDVFLNVAGGMRVDDPGLDLAVCAALLSSYEDTPVSPDLCFAGEVGLG
GEIRAVNRIENRIAEADKLGFKKIIVSKYAVKGVDLSTFGIEVIPVTKLDEMYQRLFS

Nucleotide

• Length: 1377 bp

>NTDB_id=298663 DN752_RS11660 WP_112784105.1 3008709..3010085(-) (radA) [Echinicola strongylocentroti strain MEBiC08714]
ATGCCAAAAATCAAGACGGCTTATTTCTGCCAAAATTGTGGTGCCCAAAGTCCCAAGTGGGTCGGTAAATGTCCGGCCTG
TGGGGAGTGGAATACTTTTGTAGAAGAGGTTATCCACAAGGAAGAAAATGCCCGTGGAAGCTGGAAACAAGGTTCCGAAA
AAAATAAACGAAGCAATTCGCCCAGAAAATTACATGAAATAAATTACGAAGAGCACCCTCGATTGGTCACCGAAGACGCA
GAGTTGGACCGTGTTTTGGGAGGCGGGATCGTTCCGGGTTCACTGACGCTCATTGGTGGCGAACCGGGCATAGGCAAGTC
CACCTTGATGCTCCAGATAGCCCTGATCCTAAACCAAACCAGTGTGCTGTATGTATCCGGTGAGGAAAGCGAGAGCCAGA
TCAAGATGCGGGCTGATCGGATGCAATATCACAGTGAAAACTGTTTTGTGCTTTCTGAGACCAACACACAGGTGATCTTC
CAACAAATAGAAGCACTAAAGCCAGAAGTATTGGTGATCGACTCCATACAGACCTTGCACAGCAAGCATGTGGAATCTGC
GGCAGGCTCCGTTTCCCAGGTGCGGGAGTGTACGGCGGAGCTGATGAAGTTTGCGAAAGAAACAGGCACACCGGTTTTTC
TAATTGGCCATATTACCAAAGACGGCTCCATCGCTGGGCCAAAGATCTTGGAACACATGGTGGATACCGTGTTGCAATTT
GAAGGAGACCGGCACCTTTCCTACCGGATTTTGCGTACTTCCAAAAACCGTTTTGGTTCTACCAATGAGCTCGGCATCTA
TGAAATGCGCGCGGAAGGCCTCCGTGGCGTAGCCAATCCCTCAGAGATTCTGCTCAGCCAACGCGAAGAGGTGCTCAATG
GTGTGGCCATCGGTGCCATGCTGGAAGGAAACCGTCCACTACTGATCGAGATCCAATCACTGATCAGTCCCGCCACTTAT
GGCACTCCACAGCGAAGCAGCACCGGCCATGATTCCAAACGGCTGAACATGCTCTTGGCTGTCCTGGAGAAACGCGGCGG
AATGCGGTTGGGCCAGCAGGATGTTTTCTTGAATGTGGCAGGCGGTATGCGTGTGGATGATCCAGGCTTGGATTTGGCAG
TGTGCGCAGCATTGCTTTCTTCCTACGAGGATACACCGGTATCGCCAGACTTGTGCTTTGCAGGTGAAGTGGGGTTAGGT
GGTGAAATCCGCGCCGTAAACCGCATCGAAAATCGCATCGCCGAAGCAGATAAACTAGGTTTCAAAAAAATCATCGTTTC
CAAATACGCCGTAAAAGGCGTTGACTTATCCACATTTGGCATTGAAGTAATCCCCGTCACCAAGCTGGATGAGATGTACC
AGCGATTGTTCAGCTGA

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• AAA domain (AAA_25) (77-222)

• Subunit ChlI of Mg-chelatase (ChlI) (346-428)

3D structure

• AlphaFold DB: A0A2Z4IJM6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	53.524	99.127	0.531
radA	Streptococcus pneumoniae Rx1	51.522	100	0.517
radA	Streptococcus pneumoniae D39	51.522	100	0.517
radA	Streptococcus pneumoniae R6	51.522	100	0.517
radA	Streptococcus pneumoniae TIGR4	51.522	100	0.517
radA	Streptococcus mitis SK321	51.304	100	0.515
radA	Streptococcus mitis NCTC 12261	51.304	100	0.515