Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   DOM24_RS12490 Genome accession   NZ_CP030031
Coordinates   2663639..2664520 (-) Length   293 a.a.
NCBI ID   WP_034682817.1    Uniprot ID   -
Organism   Acinetobacter radioresistens strain LH6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2658639..2669520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOM24_RS12470 (DOM24_12470) miaB 2660070..2661527 (+) 1458 WP_005018411.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  DOM24_RS12475 (DOM24_12475) - 2661566..2662663 (+) 1098 WP_111282380.1 PhoH family protein -
  DOM24_RS12480 (DOM24_12480) ybeY 2662672..2663151 (+) 480 WP_111282382.1 rRNA maturation RNase YbeY -
  DOM24_RS12485 (DOM24_12485) - 2663249..2663623 (+) 375 WP_407640820.1 hypothetical protein -
  DOM24_RS12490 (DOM24_12490) tonB2 2663639..2664520 (-) 882 WP_034682817.1 energy transducer TonB Machinery gene
  DOM24_RS12495 (DOM24_12495) - 2664764..2665444 (+) 681 WP_005018406.1 hypothetical protein -
  DOM24_RS12500 (DOM24_12500) - 2665612..2666325 (+) 714 WP_005018405.1 DUF3108 domain-containing protein -
  DOM24_RS12505 (DOM24_12505) - 2666418..2666993 (+) 576 WP_034669941.1 xanthine phosphoribosyltransferase -
  DOM24_RS12510 (DOM24_12510) wrbA 2667032..2667625 (-) 594 WP_005018403.1 NAD(P)H:quinone oxidoreductase -
  DOM24_RS12515 (DOM24_12515) - 2667738..2668982 (+) 1245 WP_005024473.1 YhjD/YihY/BrkB family envelope integrity protein -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 32995.62 Da        Isoelectric Point: 8.3816

>NTDB_id=298582 DOM24_RS12490 WP_034682817.1 2663639..2664520(-) (tonB2) [Acinetobacter radioresistens strain LH6]
MLKKIILPGGTGLAWWQDPIFMGALLLAVILHLAILTLHFAMPDPEAAASKEIAVSIRPSSEQVKDADYLAQADQQGSGR
FREAHRISSQLPASSQQQSAGEQQQETLQQMHQQPQIQFEDKVLMTIMSWRKEAEQNQRKKALEELQSQFQAKAAMAASL
EAQYLQRQQDFSRQQRIKTVDGIQAKQDAAAAYLDKFREKVELYGNRYYPQQAKAERLTGEVQLMVILNAQGGIRAIRLL
ESSGHTILDEAAKASVRKGAPFGRFDAGMKDISELRIVRTWRFDPAEAEFEVK

Nucleotide


Download         Length: 882 bp        

>NTDB_id=298582 DOM24_RS12490 WP_034682817.1 2663639..2664520(-) (tonB2) [Acinetobacter radioresistens strain LH6]
ATGTTGAAAAAAATAATTTTACCTGGTGGGACAGGTCTGGCTTGGTGGCAGGATCCGATTTTTATGGGTGCTCTGTTGCT
GGCTGTCATTTTACATTTGGCGATTTTAACTCTGCATTTTGCAATGCCAGATCCAGAGGCTGCTGCCAGTAAGGAAATCG
CTGTCAGCATTCGTCCGAGTTCTGAGCAGGTCAAAGATGCCGACTATCTGGCACAGGCAGACCAGCAGGGTTCAGGCCGC
TTCCGAGAGGCTCATCGTATCTCAAGCCAGCTACCGGCCAGTTCACAACAACAAAGTGCGGGTGAGCAGCAGCAGGAGAC
TTTACAGCAGATGCACCAACAGCCTCAAATACAGTTTGAAGACAAAGTCCTGATGACAATCATGAGCTGGCGCAAAGAAG
CGGAGCAGAACCAGCGTAAAAAAGCTTTAGAAGAATTACAGAGCCAGTTTCAGGCTAAGGCAGCAATGGCTGCCAGTCTG
GAAGCCCAGTATTTACAGCGTCAGCAGGATTTCAGCCGTCAGCAGCGTATCAAAACGGTGGATGGAATACAGGCCAAGCA
GGATGCAGCAGCTGCCTATCTGGACAAGTTCCGTGAAAAAGTTGAACTCTATGGTAACCGCTATTATCCGCAGCAGGCTA
AGGCTGAGCGCCTAACAGGAGAAGTGCAGCTTATGGTCATCTTGAATGCTCAAGGCGGGATACGTGCAATCCGGTTATTG
GAAAGTTCAGGACATACCATTCTAGATGAGGCAGCCAAGGCTTCTGTACGTAAAGGTGCGCCATTTGGGCGGTTTGATGC
AGGTATGAAAGATATTTCTGAACTACGCATTGTACGGACATGGCGATTCGACCCGGCCGAGGCTGAATTCGAAGTAAAAT
AA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(206-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

72.355

100

0.724

Multiple sequence alignment