Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   DOM24_RS05170 Genome accession   NZ_CP030031
Coordinates   1124026..1124979 (+) Length   317 a.a.
NCBI ID   WP_046205864.1    Uniprot ID   -
Organism   Acinetobacter radioresistens strain LH6     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1119026..1129979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOM24_RS05155 (DOM24_05155) - 1121103..1122347 (+) 1245 WP_111280890.1 PD-(D/E)XK nuclease family protein -
  DOM24_RS14780 (DOM24_05160) - 1122746..1122964 (+) 219 WP_010700166.1 hypothetical protein -
  DOM24_RS05165 (DOM24_05165) - 1123089..1123574 (-) 486 WP_005014761.1 Lrp/AsnC family transcriptional regulator -
  DOM24_RS05170 (DOM24_05170) ceuB 1124026..1124979 (+) 954 WP_046205864.1 ABC transporter permease Machinery gene
  DOM24_RS05175 (DOM24_05175) - 1124972..1125934 (+) 963 WP_111280892.1 iron chelate uptake ABC transporter family permease subunit -
  DOM24_RS05180 (DOM24_05180) - 1125919..1126683 (+) 765 WP_005025526.1 ABC transporter ATP-binding protein -
  DOM24_RS05185 (DOM24_05185) - 1126693..1127640 (+) 948 WP_111280894.1 siderophore ABC transporter substrate-binding protein -
  DOM24_RS05190 (DOM24_05190) - 1127942..1129150 (-) 1209 WP_111280896.1 MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34634.81 Da        Isoelectric Point: 9.6461

>NTDB_id=298571 DOM24_RS05170 WP_046205864.1 1124026..1124979(+) (ceuB) [Acinetobacter radioresistens strain LH6]
MIKRRYLFLLLVPLAVISLFTGVGEMNITGLLAGNIHEWQLFWTSRLPRLMAILVAGAGLSVCGLIMQSLSRNRFVSPTT
AGLYDCARLGVLISIILLPAASIFIKTGFAILVTLIGALVFMSILATLKHRDTVFVPLVGMIFGSIISAFTTFIALQMDL
LQNLAGWLQGDFSTILNGQYELIYLSVPILIVSYFLANRFVLAGIGEDFATNLGLNYKQTLFLGLVLVSVITGVVIVTVG
AIPFLGLIVPNIVSLYLGDNIRKTLSHTAILGALLVLVCDLFGRIVIYPYEVSVSLIMGVLGSVLFLWLLLRRYRYA

Nucleotide


Download         Length: 954 bp        

>NTDB_id=298571 DOM24_RS05170 WP_046205864.1 1124026..1124979(+) (ceuB) [Acinetobacter radioresistens strain LH6]
ATGATTAAACGTCGTTACCTATTTCTTTTGCTTGTTCCTCTTGCTGTTATTTCGTTATTTACAGGTGTGGGCGAAATGAA
TATTACTGGATTGCTGGCAGGAAATATTCATGAATGGCAATTATTCTGGACCAGCCGTTTGCCACGCTTAATGGCCATTT
TAGTTGCAGGTGCAGGGCTGAGTGTTTGTGGGCTGATTATGCAGTCACTCAGCCGGAACCGTTTTGTTTCCCCAACTACA
GCCGGTCTTTATGATTGTGCCCGGTTAGGTGTACTCATCTCGATTATCCTGCTGCCAGCCGCTTCTATTTTTATTAAAAC
CGGTTTTGCAATTTTAGTTACATTGATCGGTGCATTGGTTTTTATGAGTATTCTAGCCACACTCAAGCATCGGGATACCG
TTTTTGTTCCTCTGGTTGGTATGATCTTTGGCAGTATCATTTCTGCATTTACGACTTTTATCGCTTTGCAAATGGACTTG
CTACAAAATCTGGCGGGGTGGTTACAGGGTGACTTTTCAACCATTCTAAATGGTCAATATGAGCTGATCTATTTAAGTGT
ACCCATTTTAATAGTGAGTTATTTTCTGGCCAATCGCTTTGTGCTGGCAGGTATCGGGGAAGACTTTGCAACTAATTTAG
GTCTCAATTATAAACAGACCTTATTTTTAGGACTAGTTCTGGTATCTGTCATTACTGGTGTAGTCATCGTCACAGTTGGA
GCTATCCCATTTTTAGGTTTGATTGTTCCCAATATTGTAAGTCTGTATCTCGGAGATAACATCCGCAAGACTTTATCGCA
TACTGCAATTTTAGGGGCTTTACTGGTACTGGTCTGTGATCTGTTTGGACGTATAGTGATTTACCCGTACGAAGTTTCAG
TAAGCCTGATTATGGGTGTACTGGGCAGTGTGCTTTTCTTGTGGCTCTTGCTACGGAGGTACCGTTATGCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(11-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.799

98.738

0.502

Multiple sequence alignment