Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   ES963_RS08365 Genome accession   NZ_CP035390
Coordinates   1578791..1579240 (+) Length   149 a.a.
NCBI ID   WP_044052537.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103641     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1573791..1584240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES963_RS08325 (ES963_08325) ctaE 1573807..1574430 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  ES963_RS08330 (ES963_08330) ctaF 1574433..1574765 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  ES963_RS08335 (ES963_08335) ctaG 1574793..1575686 (+) 894 WP_003244967.1 cytochrome c oxidase assembly factor CtaG -
  ES963_RS08340 (ES963_08340) ylbA 1575718..1576080 (-) 363 WP_003232238.1 YugN family protein -
  ES963_RS08345 (ES963_08345) ylbB 1576220..1576666 (+) 447 WP_029726520.1 CBS domain-containing protein -
  ES963_RS08350 (ES963_08350) ylbC 1576750..1577790 (+) 1041 WP_014479713.1 CAP domain-containing protein -
  ES963_RS08355 (ES963_08355) ylbD 1578022..1578420 (+) 399 WP_003232233.1 YlbD family protein -
  ES963_RS08360 (ES963_08360) ylbE 1578436..1578675 (+) 240 WP_003232231.1 YlbE-like family protein -
  ES963_RS08365 (ES963_08365) ylbF 1578791..1579240 (+) 450 WP_044052537.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  ES963_RS08370 (ES963_08370) ylbG 1579295..1579567 (+) 273 WP_009967171.1 YlbG family protein -
  ES963_RS08375 (ES963_08375) rsmD 1579890..1580444 (+) 555 WP_015483196.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ES963_RS08380 (ES963_08380) coaD 1580449..1580934 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  ES963_RS08385 (ES963_08385) spoVV 1580945..1582171 (-) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  ES963_RS08390 (ES963_08390) ylbK 1582352..1583134 (+) 783 WP_129092978.1 patatin family protein -
  ES963_RS08395 (ES963_08395) sepM 1583136..1584161 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16942.01 Da        Isoelectric Point: 4.9284

>NTDB_id=298569 ES963_RS08365 WP_044052537.1 1578791..1579240(+) (ylbF) [Bacillus subtilis strain SRCM103641]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVVDFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=298569 ES963_RS08365 WP_044052537.1 1578791..1579240(+) (ylbF) [Bacillus subtilis strain SRCM103641]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGTTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGTTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

99.329

100

0.993

Multiple sequence alignment