Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   DOM24_RS04660 Genome accession   NZ_CP030031
Coordinates   1018857..1019573 (-) Length   238 a.a.
NCBI ID   WP_005014956.1    Uniprot ID   A0A2T1IX76
Organism   Acinetobacter radioresistens strain LH6     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1013857..1024573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOM24_RS04640 (DOM24_04640) - 1014646..1015965 (+) 1320 WP_034683150.1 adenylosuccinate synthase -
  DOM24_RS04645 (DOM24_04645) - 1016110..1016418 (+) 309 WP_005014961.1 phosphoethanolamine transferase domain-containing protein -
  DOM24_RS04650 (DOM24_04650) - 1016736..1017515 (+) 780 WP_005014959.1 M48 family metallopeptidase -
  DOM24_RS04655 (DOM24_04655) - 1017567..1018616 (-) 1050 WP_034670126.1 NADP(H)-dependent aldo-keto reductase -
  DOM24_RS04660 (DOM24_04660) crp 1018857..1019573 (-) 717 WP_005014956.1 cAMP-activated global transcriptional regulator CRP Regulator
  DOM24_RS04665 (DOM24_04665) - 1019720..1020142 (+) 423 WP_005025388.1 OsmC family protein -
  DOM24_RS04670 (DOM24_04670) clpB 1020380..1022959 (+) 2580 WP_111280810.1 ATP-dependent chaperone ClpB -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26786.43 Da        Isoelectric Point: 4.6838

>NTDB_id=298569 DOM24_RS04660 WP_005014956.1 1018857..1019573(-) (crp) [Acinetobacter radioresistens strain LH6]
MNSNFSQLSTDALSPGQLPESVKALLKRAKINRFPKRTTIIDAGTESKSLYLILKGSVSIVLREDDDREIVVAYLNPGDF
FGEMGLFEANPQRTAEVRTREMCEIAEISYENFHELSKQFPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LASQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETEGKAILIFDSSLEQNNESSASDFDTEDEE

Nucleotide


Download         Length: 717 bp        

>NTDB_id=298569 DOM24_RS04660 WP_005014956.1 1018857..1019573(-) (crp) [Acinetobacter radioresistens strain LH6]
ATGAATTCTAATTTTTCACAACTCAGTACTGACGCCCTTTCTCCAGGTCAACTACCTGAATCGGTGAAAGCACTACTAAA
ACGAGCAAAAATTAACAGATTTCCAAAACGTACTACCATTATTGATGCCGGTACAGAATCCAAATCTTTATATCTCATCC
TTAAAGGTTCTGTTTCTATTGTACTGCGCGAAGATGATGACCGTGAAATTGTGGTAGCCTATTTAAATCCAGGTGACTTT
TTCGGAGAAATGGGGCTTTTTGAAGCCAATCCACAACGTACAGCTGAAGTTCGTACCCGGGAGATGTGTGAAATTGCAGA
AATTAGTTATGAGAATTTTCATGAACTGAGTAAACAATTTCCCGATTTAAGCTATGCAGTATTTGCCCAGCTCGTGCGTC
GCCTGAAAAACACTACACGTAAAGTAACTGATCTGGCTTTTATTGATGTGTCTGGACGAATTGCGCGTTGCCTGATTGAT
CTGGCATCTCAGCCTGAGGCCATGATTTTACCTAATGGCCGCCAGATCCGTATTACCCGTCAGGAAATCGGCCGTATTGT
AGGCTGCTCACGTGAAATGGTTGGCCGTGTCCTCAAAACTCTTGAGGAGCAAGGTATGATTGAAACAGAAGGTAAAGCGA
TACTGATCTTTGATAGTTCACTTGAACAGAATAATGAATCATCTGCCTCAGATTTTGATACTGAAGATGAAGAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, crp family (Crp)

(176-207)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T1IX76

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

88.235

100

0.882
  crp Vibrio cholerae strain A1552

47.596

87.395

0.416
  crp Haemophilus influenzae Rd KW20

48.205

81.933

0.395

Multiple sequence alignment