Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   ES963_RS08395 Genome accession   NZ_CP035390
Coordinates   1583136..1584161 (+) Length   341 a.a.
NCBI ID   WP_003245451.1    Uniprot ID   O34470
Organism   Bacillus subtilis strain SRCM103641     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1578136..1589161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES963_RS08360 (ES963_08360) ylbE 1578436..1578675 (+) 240 WP_003232231.1 YlbE-like family protein -
  ES963_RS08365 (ES963_08365) ylbF 1578791..1579240 (+) 450 WP_044052537.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  ES963_RS08370 (ES963_08370) ylbG 1579295..1579567 (+) 273 WP_009967171.1 YlbG family protein -
  ES963_RS08375 (ES963_08375) rsmD 1579890..1580444 (+) 555 WP_015483196.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ES963_RS08380 (ES963_08380) coaD 1580449..1580934 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  ES963_RS08385 (ES963_08385) spoVV 1580945..1582171 (-) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  ES963_RS08390 (ES963_08390) ylbK 1582352..1583134 (+) 783 WP_129092978.1 patatin family protein -
  ES963_RS08395 (ES963_08395) sepM 1583136..1584161 (+) 1026 WP_003245451.1 protease DdcP Regulator
  ES963_RS08400 (ES963_08400) tmcAL 1584178..1585425 (-) 1248 WP_046160387.1 nucleotidyltransferase -
  ES963_RS08405 (ES963_08405) - 1585422..1585607 (-) 186 WP_003232215.1 hypothetical protein -
  ES963_RS08410 (ES963_08410) ylbN 1585635..1586153 (+) 519 WP_014479718.1 DUF177 domain-containing protein -
  ES963_RS08415 (ES963_08415) rpmF 1586175..1586354 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  ES963_RS08420 (ES963_08420) gerR 1586500..1587081 (+) 582 WP_015383592.1 sporulation specific transcriptional regulator GerR -
  ES963_RS08425 (ES963_08425) ylbP 1587138..1587620 (-) 483 WP_014476736.1 N-acetyltransferase -
  ES963_RS08430 (ES963_08430) panEA 1587779..1588675 (+) 897 WP_085186112.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37651.23 Da        Isoelectric Point: 6.5347

>NTDB_id=298570 ES963_RS08395 WP_003245451.1 1583136..1584161(+) (sepM) [Bacillus subtilis strain SRCM103641]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=298570 ES963_RS08395 WP_003245451.1 1583136..1584161(+) (sepM) [Bacillus subtilis strain SRCM103641]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCGTTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CTGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTAATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATTGAAAATATTGGCGGTCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
TGGGAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

Peptidase family M50 (Peptidase_M50)

(59-220)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2KJP

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.402