Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   DOM24_RS00930 Genome accession   NZ_CP030031
Coordinates   203086..203412 (+) Length   108 a.a.
NCBI ID   WP_005017085.1    Uniprot ID   A0A062BQE3
Organism   Acinetobacter radioresistens strain LH6     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 198086..208412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOM24_RS00905 (DOM24_00905) hemC 198716..199636 (+) 921 WP_171287458.1 hydroxymethylbilane synthase -
  DOM24_RS00910 (DOM24_00910) - 199642..200424 (+) 783 WP_111280173.1 uroporphyrinogen-III synthase -
  DOM24_RS00915 (DOM24_00915) - 200421..201269 (+) 849 WP_111280175.1 hypothetical protein -
  DOM24_RS00920 (DOM24_00920) - 201279..202472 (+) 1194 WP_111280177.1 heme biosynthesis protein HemY -
  DOM24_RS00925 (DOM24_00925) - 202482..202919 (+) 438 WP_111280179.1 thioesterase family protein -
  DOM24_RS00930 (DOM24_00930) hns 203086..203412 (+) 327 WP_005017085.1 H-NS family nucleoid-associated regulatory protein Regulator
  DOM24_RS00935 (DOM24_00935) gspN 203578..204321 (+) 744 WP_034671431.1 type II secretion system protein N -
  DOM24_RS00940 (DOM24_00940) - 204321..205163 (+) 843 WP_111280181.1 type II secretion system protein N -
  DOM24_RS00945 (DOM24_00945) gspD 205205..207460 (+) 2256 WP_111280183.1 type II secretion system secretin GspD -
  DOM24_RS00950 (DOM24_00950) - 207526..208185 (+) 660 WP_034683631.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12369.08 Da        Isoelectric Point: 4.8451

>NTDB_id=298559 DOM24_RS00930 WP_005017085.1 203086..203412(+) (hns) [Acinetobacter radioresistens strain LH6]
MKPDISELSVEDLKRLQLEAEALIASKKDQAVDEAYEQVLEIAENVGLTIEQLLEFGAQKRKKTTRKSVEPRYRNTENPE
ETWTGRGKQPRWLVAALEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=298559 DOM24_RS00930 WP_005017085.1 203086..203412(+) (hns) [Acinetobacter radioresistens strain LH6]
ATGAAGCCAGATATTAGTGAACTTTCGGTAGAAGATCTCAAAAGATTACAGCTTGAAGCCGAAGCATTAATCGCCAGCAA
AAAAGATCAAGCAGTAGATGAAGCTTATGAACAGGTTTTAGAAATTGCTGAAAATGTGGGTCTGACTATTGAACAGTTGC
TAGAATTTGGAGCGCAAAAGCGCAAGAAAACAACACGTAAATCAGTAGAGCCACGTTATCGTAATACTGAAAATCCTGAA
GAAACTTGGACAGGACGTGGTAAGCAGCCACGCTGGTTAGTAGCAGCCCTTGAAAAAGGTGCAAAACTTGAAGATTTTCT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(13-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062BQE3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

85.185

100

0.852

Multiple sequence alignment