Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DOE64_RS15015 Genome accession   NZ_CP030024
Coordinates   2875968..2876573 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Ohio strain SA20120345     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2870968..2881573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOE64_RS15000 (DOE64_14990) helD 2871185..2873239 (-) 2055 WP_023254768.1 DNA helicase IV -
  DOE64_RS15005 (DOE64_14995) - 2873363..2873809 (+) 447 WP_001261222.1 YccF domain-containing protein -
  DOE64_RS15010 (DOE64_15000) yccS 2873828..2875981 (+) 2154 WP_114043374.1 YccS family putative transporter -
  DOE64_RS15015 (DOE64_15005) sxy/tfoX 2875968..2876573 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  DOE64_RS15020 (DOE64_15010) sulA 2876790..2877299 (+) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  DOE64_RS15025 (DOE64_15015) ompA 2877656..2878708 (+) 1053 WP_023193195.1 porin OmpA -
  DOE64_RS15030 (DOE64_15020) matP 2878780..2879232 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  DOE64_RS15035 (DOE64_15025) - 2879418..2881178 (+) 1761 WP_000156448.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=298520 DOE64_RS15015 WP_001202375.1 2875968..2876573(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Ohio strain SA20120345]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=298520 DOE64_RS15015 WP_001202375.1 2875968..2876573(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Ohio strain SA20120345]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCCCCCGCCTGGCTCATGTTCATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCGCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCTAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment