Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   DK877_RS04005 Genome accession   NZ_CP030023
Coordinates   781607..782410 (+) Length   267 a.a.
NCBI ID   WP_009910233.1    Uniprot ID   A0A123TMP5
Organism   Streptococcus suis strain ISU2414     
Function   require for competence development (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 783147..784349 781607..782410 flank 737


Gene organization within MGE regions


Location: 781607..784349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK877_RS04005 (DK877_04130) vicX 781607..782410 (+) 804 WP_009910233.1 MBL fold metallo-hydrolase Regulator
  DK877_RS04010 (DK877_04140) - 783147..784349 (-) 1203 Protein_745 IS110 family transposase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29645.73 Da        Isoelectric Point: 5.7755

>NTDB_id=298483 DK877_RS04005 WP_009910233.1 781607..782410(+) (vicX) [Streptococcus suis strain ISU2414]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKVTSLLAEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDIEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=298483 DK877_RS04005 WP_009910233.1 781607..782410(+) (vicX) [Streptococcus suis strain ISU2414]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGGTCCAGCGGGAATTGTTTTTACCTAGAAACAGATAAAAA
GAAAATTTTAGTGGATGCTGGCTTATCAGGGAAAAAGGTTACCAGTCTTTTGGCGGAAATTGATCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTATGGCATGGAT
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTCGA
ATTGGGTGCTATGAAGACTTTTGGTGACCTAGATATTGAGTCCTTTGGAGTTAGCCATGATGCTGCATGTCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCCTTTGTTATGTTGACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTA
GAAAATGCCGATGCTTATTTGATTGAATCGAACCATGATATTGAAATTTTGCGCTCAGGTTCTTATTCATGGAATTTGAA
GCAACGGATTCTATCCGATAAGGGACATCTTTGTAACGAAGATGGAGCTGATGCCATGATTCGCTCGTTGGGAAATCGGA
CCAAAAAGATTTACCTAGGGCATTTGTCAAAGGAAAACAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAATTG
GCTCAGGCTGATTTAGGAGTTGGAGTGGATTTCCAAGTCTATGACACATCGCCAGATACAGCGACTCCCTTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A123TMP5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.779

100

0.768

Multiple sequence alignment