Detailed information
Bioinformatically predicted
Overview
| Name | treR | Type | Regulator |
| Locus tag | DK877_RS01230 | Genome accession | NZ_CP030023 |
| Coordinates | 224437..225150 (+) | Length | 237 a.a. |
| NCBI ID | WP_012774930.1 | Uniprot ID | A0A142UPI2 |
| Organism | Streptococcus suis strain ISU2414 | ||
| Function | regulate expression of competence genes (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 208211..254233 | 224437..225150 | within | 0 |
Gene organization within MGE regions
Location: 208211..254233
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DK877_RS01165 (DK877_01200) | - | 208211..209155 (+) | 945 | WP_024409330.1 | IS30 family transposase | - |
| DK877_RS01170 (DK877_01205) | - | 209213..210241 (+) | 1029 | WP_002935967.1 | ABC transporter substrate-binding protein | - |
| DK877_RS01175 (DK877_01210) | - | 210335..211144 (+) | 810 | WP_002935966.1 | hypothetical protein | - |
| DK877_RS11275 | - | 211317..213378 (+) | 2062 | Protein_202 | heavy metal translocating P-type ATPase | - |
| DK877_RS01195 (DK877_01230) | - | 213417..215906 (-) | 2490 | WP_053338565.1 | ATP-dependent RecD-like DNA helicase | - |
| DK877_RS01200 (DK877_01235) | lepB | 215970..216599 (-) | 630 | WP_002935959.1 | signal peptidase I | - |
| DK877_RS01205 (DK877_01240) | rnhC | 216609..217499 (-) | 891 | WP_013730101.1 | ribonuclease HIII | - |
| DK877_RS01210 (DK877_01245) | - | 217584..218567 (+) | 984 | WP_009909178.1 | Gfo/Idh/MocA family protein | - |
| DK877_RS01215 (DK877_01250) | - | 218916..220091 (+) | 1176 | WP_013730102.1 | LysM domain-containing protein | - |
| DK877_RS01220 (DK877_01255) | treC | 220504..222129 (-) | 1626 | WP_009909185.1 | alpha,alpha-phosphotrehalase | - |
| DK877_RS01225 (DK877_01260) | treP | 222210..224204 (-) | 1995 | WP_002935953.1 | PTS system trehalose-specific EIIBC component | - |
| DK877_RS01230 (DK877_01265) | treR | 224437..225150 (+) | 714 | WP_012774930.1 | trehalose operon repressor | Regulator |
| DK877_RS01235 (DK877_01270) | - | 225208..225519 (+) | 312 | WP_002935948.1 | hypothetical protein | - |
| DK877_RS01240 (DK877_01275) | - | 225516..226064 (+) | 549 | WP_002935945.1 | CvpA family protein | - |
| DK877_RS01245 (DK877_01285) | - | 226615..228948 (+) | 2334 | WP_053863258.1 | endonuclease MutS2 | - |
| DK877_RS01250 (DK877_01290) | - | 229114..229506 (+) | 393 | WP_014636774.1 | DUF1310 family protein | - |
| DK877_RS01255 (DK877_01295) | - | 229499..229762 (+) | 264 | WP_022540536.1 | hypothetical protein | - |
| DK877_RS01260 (DK877_01300) | - | 229788..230165 (+) | 378 | WP_002935940.1 | DUF1310 family protein | - |
| DK877_RS01265 (DK877_01305) | - | 230212..230469 (+) | 258 | WP_002935939.1 | hypothetical protein | - |
| DK877_RS01270 (DK877_01310) | - | 230564..230953 (+) | 390 | WP_002935938.1 | DUF1310 family protein | - |
| DK877_RS01275 (DK877_01315) | - | 230946..232196 (+) | 1251 | WP_002935930.1 | Mbeg1-like protein | - |
| DK877_RS01280 (DK877_01320) | - | 232298..232675 (+) | 378 | WP_024390453.1 | DUF1310 family protein | - |
| DK877_RS01285 (DK877_01325) | - | 232678..232980 (+) | 303 | WP_029694155.1 | hypothetical protein | - |
| DK877_RS01290 (DK877_01330) | - | 233075..233455 (+) | 381 | WP_002935927.1 | DUF1310 family protein | - |
| DK877_RS01295 (DK877_01335) | - | 233462..234724 (+) | 1263 | WP_002935926.1 | triacylglycerol lipase | - |
| DK877_RS01300 (DK877_01340) | - | 234703..235089 (+) | 387 | WP_002935925.1 | hypothetical protein | - |
| DK877_RS01305 (DK877_01345) | - | 235102..235422 (+) | 321 | WP_002935924.1 | hypothetical protein | - |
| DK877_RS01310 (DK877_01350) | trxA | 235662..235976 (+) | 315 | WP_002935923.1 | thioredoxin | - |
| DK877_RS11300 | - | 236069..236119 (-) | 51 | WP_353735889.1 | hypothetical protein | - |
| DK877_RS01315 (DK877_01355) | - | 236109..237638 (+) | 1530 | WP_009909192.1 | AMP-binding protein | - |
| DK877_RS01320 (DK877_01360) | msrB | 237678..238619 (+) | 942 | WP_009909193.1 | peptide-methionine (R)-S-oxide reductase MsrB | - |
| DK877_RS01325 (DK877_01365) | - | 238811..239155 (+) | 345 | WP_014636777.1 | hypothetical protein | - |
| DK877_RS01330 (DK877_01370) | - | 239152..239385 (+) | 234 | WP_002935912.1 | hypothetical protein | - |
| DK877_RS01335 (DK877_01375) | - | 239463..239873 (+) | 411 | WP_002935911.1 | hypothetical protein | - |
| DK877_RS01340 (DK877_01380) | - | 239873..240148 (+) | 276 | WP_002935908.1 | hypothetical protein | - |
| DK877_RS01345 (DK877_01385) | - | 240174..240575 (+) | 402 | WP_014636783.1 | hypothetical protein | - |
| DK877_RS01350 (DK877_01390) | - | 240572..241786 (+) | 1215 | WP_002935904.1 | alpha/beta fold hydrolase | - |
| DK877_RS01355 (DK877_01395) | - | 241771..242160 (+) | 390 | WP_002935902.1 | hypothetical protein | - |
| DK877_RS01360 (DK877_01400) | - | 242147..242440 (+) | 294 | WP_002935900.1 | hypothetical protein | - |
| DK877_RS01365 (DK877_01405) | - | 242815..244800 (+) | 1986 | WP_013730105.1 | DUF1430 domain-containing protein | - |
| DK877_RS01370 (DK877_01410) | - | 244820..246802 (+) | 1983 | WP_009909197.1 | DUF1430 domain-containing protein | - |
| DK877_RS01375 (DK877_01415) | - | 246804..247436 (+) | 633 | WP_009909198.1 | ABC transporter ATP-binding protein | - |
| DK877_RS01380 (DK877_01420) | - | 247859..249193 (+) | 1335 | WP_009909199.1 | sodium:alanine symporter family protein | - |
| DK877_RS01385 (DK877_01425) | - | 249275..250909 (-) | 1635 | WP_024409304.1 | recombinase family protein | - |
| DK877_RS01390 (DK877_01430) | - | 251144..251941 (-) | 798 | WP_024409305.1 | replication-relaxation family protein | - |
| DK877_RS01395 (DK877_01435) | - | 252029..254233 (-) | 2205 | Protein_244 | type IV secretory system conjugative DNA transfer family protein | - |
Sequence
Protein
Download Length: 237 a.a. Molecular weight: 27200.07 Da Isoelectric Point: 6.7422
>NTDB_id=298470 DK877_RS01230 WP_012774930.1 224437..225150(+) (treR) [Streptococcus suis strain ISU2414]
MKKYQEIYNDLKEKIRTNVYPAESSLPTEQQLQEIYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLT
SYQELTNVLQLSTKTDVVSLDMITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
EYLENKLGLDIAYAQKEITVEPTNREERELMQSKDDYLVLIKSRVYLGDTQQFQYTESKHKIDKFRFVDFARRKHSL
MKKYQEIYNDLKEKIRTNVYPAESSLPTEQQLQEIYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLT
SYQELTNVLQLSTKTDVVSLDMITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
EYLENKLGLDIAYAQKEITVEPTNREERELMQSKDDYLVLIKSRVYLGDTQQFQYTESKHKIDKFRFVDFARRKHSL
Nucleotide
Download Length: 714 bp
>NTDB_id=298470 DK877_RS01230 WP_012774930.1 224437..225150(+) (treR) [Streptococcus suis strain ISU2414]
ATGAAAAAATACCAAGAAATTTATAATGACTTAAAAGAAAAAATACGGACAAATGTTTATCCGGCAGAAAGCTCCCTACC
GACAGAACAGCAGCTTCAGGAAATCTATGGTGTTAGTCGTGATACGGTTCGTAAGGCGTTGGCGATTTTGACTGAGGGAG
GTTTGATTCAAAAAGTGCAAGGGCGTGGTTCAATGGTCCTTAAGCAAGAAATTCTCAATTTCCCAGTTTCAGGTTTAACT
TCCTATCAGGAATTAACAAATGTTCTCCAGCTTTCTACCAAGACAGATGTTGTCAGCTTAGATATGATTACCGTTAATAG
TAGCCTTTCGCACTTGACAGGCTTTGAGCCGTATAGCAAGGTGTGGAAAGTTGTCCGTACACGTTCAATTGACGGTAAGG
TCTCCGTTGTGGATACAGATTATCTTGCTGTCGATGTCGTGCCAGAGTTGACAACTGCTATTGCTGAAAAATCCATCTAC
GAATACCTAGAAAATAAGTTAGGCCTTGATATTGCTTATGCACAAAAAGAGATTACGGTAGAGCCGACCAATCGAGAAGA
GCGTGAGCTAATGCAATCGAAGGATGATTATTTGGTCTTGATTAAATCTCGTGTCTATCTCGGTGATACCCAACAATTCC
AATATACAGAAAGCAAGCATAAAATTGATAAATTCCGCTTTGTAGATTTTGCTCGTAGAAAGCATTCTTTATAG
ATGAAAAAATACCAAGAAATTTATAATGACTTAAAAGAAAAAATACGGACAAATGTTTATCCGGCAGAAAGCTCCCTACC
GACAGAACAGCAGCTTCAGGAAATCTATGGTGTTAGTCGTGATACGGTTCGTAAGGCGTTGGCGATTTTGACTGAGGGAG
GTTTGATTCAAAAAGTGCAAGGGCGTGGTTCAATGGTCCTTAAGCAAGAAATTCTCAATTTCCCAGTTTCAGGTTTAACT
TCCTATCAGGAATTAACAAATGTTCTCCAGCTTTCTACCAAGACAGATGTTGTCAGCTTAGATATGATTACCGTTAATAG
TAGCCTTTCGCACTTGACAGGCTTTGAGCCGTATAGCAAGGTGTGGAAAGTTGTCCGTACACGTTCAATTGACGGTAAGG
TCTCCGTTGTGGATACAGATTATCTTGCTGTCGATGTCGTGCCAGAGTTGACAACTGCTATTGCTGAAAAATCCATCTAC
GAATACCTAGAAAATAAGTTAGGCCTTGATATTGCTTATGCACAAAAAGAGATTACGGTAGAGCCGACCAATCGAGAAGA
GCGTGAGCTAATGCAATCGAAGGATGATTATTTGGTCTTGATTAAATCTCGTGTCTATCTCGGTGATACCCAACAATTCC
AATATACAGAAAGCAAGCATAAAATTGATAAATTCCGCTTTGTAGATTTTGCTCGTAGAAAGCATTCTTTATAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| treR | Streptococcus mutans UA159 |
52.137 |
98.734 |
0.515 |