Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   ERO09_RS08265 Genome accession   NZ_CP035368
Coordinates   1666341..1666943 (-) Length   200 a.a.
NCBI ID   WP_128787749.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain LC_1315_18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1661341..1671943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ERO09_RS08240 (ERO09_08245) - 1661716..1662183 (+) 468 WP_128787746.1 hypothetical protein -
  ERO09_RS08245 (ERO09_08250) - 1662272..1663693 (-) 1422 WP_111304349.1 sucrose-specific PTS transporter subunit IIBC -
  ERO09_RS08255 (ERO09_08260) secG 1663929..1664276 (-) 348 WP_128787747.1 preprotein translocase subunit SecG -
  ERO09_RS08260 (ERO09_08265) - 1664393..1666336 (-) 1944 WP_128787748.1 DNA topoisomerase III -
  ERO09_RS08265 (ERO09_08270) recR 1666341..1666943 (-) 603 WP_128787749.1 recombination mediator RecR Machinery gene
  ERO09_RS08270 (ERO09_08275) - 1667005..1667334 (-) 330 WP_005696839.1 YbaB/EbfC family nucleoid-associated protein -
  ERO09_RS08275 (ERO09_08280) - 1667470..1668561 (+) 1092 WP_128787750.1 metallophosphoesterase -
  ERO09_RS08280 (ERO09_08285) - 1668638..1669465 (+) 828 WP_128787751.1 transferrin-binding protein-like solute binding protein -
  ERO09_RS08285 (ERO09_08290) - 1669522..1670892 (-) 1371 WP_128787752.1 L-serine ammonia-lyase -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22090.18 Da        Isoelectric Point: 6.3981

>NTDB_id=298409 ERO09_RS08265 WP_128787749.1 1666341..1666943(-) (recR) [Haemophilus parainfluenzae strain LC_1315_18]
MQSSPLLEHLIENFRCLPGVGPKSAQRMAYHLLQRNRSGGMNLARALTEAMSKIGHCSQCRDFTEEETCNICNNPRRQNS
GLLCVVEMPADIQAIEQTGQFSGRYFVLMGHLSPLDGIGPKEIGLDLLQKRLVEESFHEVILATNPTVEGDATANYIAEI
CHQHNIKVSRIAHGIPVGGELETVDGTTLTHSFLGRRQID

Nucleotide


Download         Length: 603 bp        

>NTDB_id=298409 ERO09_RS08265 WP_128787749.1 1666341..1666943(-) (recR) [Haemophilus parainfluenzae strain LC_1315_18]
ATGCAAAGCAGTCCACTTTTAGAACATCTTATTGAAAACTTTCGTTGCTTGCCGGGTGTAGGCCCGAAATCAGCGCAGCG
CATGGCTTATCATCTTTTACAGCGCAATCGTAGCGGTGGGATGAATTTAGCTCGTGCATTAACGGAAGCGATGTCTAAAA
TTGGGCATTGTTCGCAGTGTCGTGATTTTACCGAAGAGGAAACGTGCAATATTTGTAACAATCCTCGCCGTCAAAATTCA
GGTTTGCTTTGCGTGGTGGAAATGCCGGCGGATATTCAAGCCATTGAGCAAACAGGCCAATTTTCTGGGCGTTATTTTGT
CTTAATGGGGCACTTATCGCCTTTAGATGGTATTGGTCCAAAAGAGATAGGTTTAGATTTATTGCAAAAACGTCTAGTAG
AAGAATCTTTCCACGAGGTGATTTTAGCGACCAATCCAACGGTGGAAGGCGATGCCACGGCCAATTATATTGCTGAAATT
TGCCATCAACATAATATTAAAGTGAGCCGTATTGCCCACGGGATCCCTGTCGGAGGGGAATTAGAAACCGTGGACGGCAC
TACTTTAACCCACTCTTTCTTAGGTCGTCGTCAGATCGACTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-172)

RecR protein (RecR_ZnF)

(41-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

44.221

99.5

0.44
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.216

99.5

0.43

Multiple sequence alignment