Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   ERO09_RS06585 Genome accession   NZ_CP035368
Coordinates   1348677..1351079 (-) Length   800 a.a.
NCBI ID   WP_172622016.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain LC_1315_18     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1343677..1356079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ERO09_RS06565 (ERO09_06565) kdsB 1344877..1345635 (-) 759 WP_128787524.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ERO09_RS06570 (ERO09_06570) - 1345645..1345824 (-) 180 WP_049372406.1 Trm112 family protein -
  ERO09_RS06575 (ERO09_06575) lpxK 1345842..1346822 (-) 981 WP_128787525.1 tetraacyldisaccharide 4'-kinase -
  ERO09_RS06580 (ERO09_06580) msbA 1346876..1348639 (-) 1764 WP_128787526.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  ERO09_RS06585 (ERO09_06585) rec2 1348677..1351079 (-) 2403 WP_172622016.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ERO09_RS06590 (ERO09_06590) dksA 1351342..1351779 (+) 438 WP_128787527.1 RNA polymerase-binding protein DksA -
  ERO09_RS06595 (ERO09_06595) pcnB 1351957..1353372 (+) 1416 WP_149785878.1 polynucleotide adenylyltransferase PcnB -
  ERO09_RS06600 (ERO09_06600) folK 1353372..1353875 (+) 504 WP_128787529.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  ERO09_RS06605 (ERO09_06605) - 1354031..1354942 (-) 912 WP_128787530.1 hypothetical protein -

Sequence

Protein


Download         Length: 800 a.a.        Molecular weight: 90592.12 Da        Isoelectric Point: 9.1747

>NTDB_id=298402 ERO09_RS06585 WP_172622016.1 1348677..1351079(-) (rec2) [Haemophilus parainfluenzae strain LC_1315_18]
MKLTLFQLCIMLIISAFSLLIVPDFLLFTWQRAGLSILMLVMTAFCFHWFNYFKVRNFCINGICFLLALAYVHSQALSLL
TQAEKISSLPNKIALDLHISEIFHQQDYQTLVARTSLFDGQEQRIFINWKTPEKPQLGEVWRADVKLRPISARLNHGGFD
RQQWYFSKRIIAVGNVKSAVKIGEDFSFRTHFLQNSLKQTEGLSLQGLLIALAFGERAWLDNKTWLIYQQTNTAHLIAIS
GLHIGLAMGLGFFFARFLQLALPTRFISPWFPLCFGVLIALGYAYLAGFSLPTFRAMMALVFIAILQFSRRYYTPLQMLC
LVVVFLLFCDPLMPLSVSFWLSIGAVTCLIVWYRYVPLSIIEWRHQKLSNKVRWILGLFHLQLGLLILFTPIQLFFFNGT
ALNGFLANLIAVPLYSFLLVPLILFAVLTNGAFSSWHLSNAIAQGITQCLSFFQGWYMPISINLSLILTTLLSLVFGGML
YGLYFASQRKTKNTPLKSSRFFTLNSTKILSPEEYKQALRSVIFIFCFCIGTLGYRYIMKPKWQLDTLDVGQGLATLIVK
DGKGVLYDTGPAWQSGIGGSSMVELEILPYLQREGIELETLILSHDDNDHSGGAKAILAAYPEIELITPSRKNYGETHRT
FCLQEKQWQWQGLDFKILSPAQITDRAENPQSCVILFTDGQYQILLTGDADVATERSFAENLGKINVLQVGHHGSKTSTG
EILLAQTKPDLALISSGRWNAWNFPHPTVIERLNRYQSAVENTAISGHIRLNFTEKGIEIEKARGDFSPWFARVIGLSPK

Nucleotide


Download         Length: 2403 bp        

>NTDB_id=298402 ERO09_RS06585 WP_172622016.1 1348677..1351079(-) (rec2) [Haemophilus parainfluenzae strain LC_1315_18]
ATGAAACTCACGTTATTTCAACTGTGCATCATGCTCATCATTTCAGCCTTTTCTTTGCTTATCGTGCCTGATTTTTTACT
GTTTACCTGGCAACGAGCGGGGCTGAGCATTTTAATGTTGGTTATGACTGCATTTTGTTTCCATTGGTTCAATTATTTTA
AAGTCAGAAATTTTTGCATTAACGGCATTTGTTTTTTGCTTGCCTTAGCTTACGTGCATTCACAAGCCTTGTCCTTATTG
ACTCAAGCAGAAAAAATCTCCAGTTTACCGAATAAAATCGCTTTAGATCTTCACATCTCAGAAATTTTTCATCAGCAAGA
TTATCAAACGTTGGTTGCAAGAACGTCCTTATTTGATGGGCAAGAACAACGGATTTTTATTAATTGGAAAACACCTGAAA
AGCCACAGTTAGGCGAAGTTTGGCGAGCTGATGTAAAGCTTCGTCCTATTTCGGCGAGATTAAATCATGGAGGGTTTGAT
CGACAACAATGGTATTTTTCCAAAAGAATTATTGCCGTAGGGAATGTGAAAAGTGCGGTCAAAATTGGTGAAGATTTTTC
TTTCCGCACACATTTTCTACAAAATAGCCTCAAACAGACGGAAGGGCTTTCTTTACAAGGTTTACTTATCGCATTGGCAT
TTGGTGAGCGAGCTTGGCTGGATAATAAAACGTGGCTGATTTACCAACAAACGAATACAGCACATTTAATTGCCATTTCA
GGACTCCATATCGGTTTAGCAATGGGCTTAGGCTTTTTCTTTGCTCGATTCTTGCAACTTGCACTGCCTACACGCTTTAT
TTCGCCCTGGTTTCCGCTTTGCTTTGGTGTATTGATTGCTTTAGGTTATGCCTATTTAGCTGGATTTAGTTTACCAACCT
TCCGTGCAATGATGGCATTGGTTTTTATTGCCATCCTTCAATTTTCTCGGCGATATTACACACCTTTGCAAATGCTGTGT
TTGGTGGTAGTATTTTTGCTTTTTTGTGATCCGCTTATGCCGCTTTCGGTGAGCTTTTGGCTTTCAATTGGTGCCGTTAC
CTGTCTGATTGTGTGGTACCGATATGTTCCCTTATCAATCATTGAATGGCGACATCAAAAATTATCCAACAAAGTGCGGT
GGATTTTAGGCTTGTTTCATTTGCAGTTGGGGCTGCTGATTTTATTCACGCCTATTCAGCTTTTCTTTTTTAATGGTACG
GCGTTAAATGGATTCTTAGCAAATTTAATTGCAGTGCCCTTGTATAGTTTCTTACTTGTACCCTTAATTCTCTTTGCGGT
ATTAACGAATGGTGCATTTTCTTCTTGGCATCTTTCAAATGCGATTGCTCAAGGTATTACACAATGCCTTAGTTTTTTCC
AAGGCTGGTACATGCCGATTTCAATTAATTTATCTCTCATTCTGACCACACTTTTAAGCCTTGTTTTCGGCGGAATGTTA
TATGGTTTGTATTTTGCATCTCAAAGGAAAACAAAAAACACACCGCTAAAATCAAGTCGATTTTTCACATTAAACAGCAC
AAAAATCTTATCACCAGAAGAGTATAAACAAGCGCTTCGTAGTGTCATTTTTATTTTTTGTTTTTGTATTGGCACGCTTG
GGTATCGATATATCATGAAACCCAAATGGCAGTTAGATACGTTAGATGTTGGACAAGGTTTAGCAACCTTAATTGTGAAA
GACGGGAAAGGTGTATTGTATGACACAGGGCCTGCTTGGCAGAGTGGAATAGGTGGCTCTTCTATGGTGGAATTGGAAAT
ATTGCCTTATCTTCAACGAGAAGGCATTGAACTTGAAACCTTGATTTTAAGCCATGATGATAATGATCATTCGGGCGGCG
CCAAAGCGATTTTAGCCGCATATCCAGAGATTGAACTGATTACACCTTCTCGTAAAAACTATGGCGAAACGCACCGCACT
TTTTGTCTTCAGGAGAAACAGTGGCAGTGGCAAGGGCTTGATTTTAAAATTCTTTCACCCGCGCAAATAACCGATAGGGC
GGAGAATCCCCAATCTTGCGTGATTTTATTCACGGATGGACAGTATCAGATTCTGTTAACCGGTGATGCGGATGTGGCAA
CAGAAAGATCTTTTGCTGAAAACCTCGGCAAGATTAATGTGTTACAGGTAGGACATCATGGTAGTAAAACTTCAACAGGC
GAGATTTTACTGGCACAGACAAAACCTGATCTAGCCTTAATTTCAAGCGGGCGATGGAATGCGTGGAATTTTCCTCATCC
AACCGTCATTGAACGATTAAATCGTTATCAAAGTGCGGTCGAAAATACCGCTATTTCAGGTCATATAAGGTTAAATTTTA
CTGAAAAGGGCATTGAAATTGAAAAGGCGAGAGGAGATTTTTCACCTTGGTTTGCCCGTGTAATTGGATTATCCCCGAAA
TAA

Domains

Predicted by InterProScan.

Domain of unknown function (DUF4131) (DUF4131)

(31-179)

Competence protein (Competence)

(212-477)

Metallo-beta-lactamase superfamily (Lactamase_B)

(549-735)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

60.549

100

0.606

Multiple sequence alignment