Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   ERO09_RS01630 Genome accession   NZ_CP035368
Coordinates   347064..349061 (+) Length   665 a.a.
NCBI ID   WP_128786921.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain LC_1315_18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 342064..354061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ERO09_RS01600 (ERO09_01590) - 342697..342975 (+) 279 WP_049355840.1 helix-turn-helix domain-containing protein -
  ERO09_RS01605 (ERO09_01595) - 342975..344255 (+) 1281 WP_080969737.1 type II toxin-antitoxin system HipA family toxin -
  ERO09_RS10450 - 344294..344500 (-) 207 WP_225852610.1 hypothetical protein -
  ERO09_RS10455 - 344505..344771 (-) 267 WP_225852611.1 hypothetical protein -
  ERO09_RS01615 (ERO09_01605) - 344776..345267 (-) 492 WP_049355836.1 YajQ family cyclic di-GMP-binding protein -
  ERO09_RS01620 (ERO09_01610) serB 345288..346232 (-) 945 WP_128786920.1 phosphoserine phosphatase -
  ERO09_RS01625 (ERO09_01615) - 346301..346978 (+) 678 WP_075875828.1 YtjB family periplasmic protein -
  ERO09_RS01630 (ERO09_01620) recP/tkt 347064..349061 (+) 1998 WP_128786921.1 transketolase Machinery gene
  ERO09_RS01635 (ERO09_01625) - 349574..350944 (+) 1371 WP_128786922.1 sodium:alanine symporter family protein -
  ERO09_RS01640 (ERO09_01630) raiA 351186..351509 (+) 324 WP_128786923.1 ribosome-associated translation inhibitor RaiA -
  ERO09_RS01645 (ERO09_01635) - 351575..353875 (-) 2301 WP_128786924.1 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor -

Sequence

Protein


Download         Length: 665 a.a.        Molecular weight: 72731.26 Da        Isoelectric Point: 6.0926

>NTDB_id=298375 ERO09_RS01630 WP_128786921.1 347064..349061(+) (recP/tkt) [Haemophilus parainfluenzae strain LC_1315_18]
MATRRQLANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLKHNPNNPKWADRDRFVLSNGHGSMLIYSLLHLTGY
DLSIEDLKQFRQLHSKTPGHPEYGYAPGVETTTGPLGQGITNAVGMAIAEKTLAGQFNRKGHEIVDHHTYVFLGDGCLME
GISHEACSLAGTLGLGKLIAFYDDNNISIDGHVDGWFSDDTAARFEAYGWQVIRNVDGHDAEQIRAATILAQAEKEKPTL
IICKTIIGFGSPNKSGSHDCHGAPLGDEEIALTRKALGWEYGPFEIPAEYYAEWSAKEKGAAAEKSWEEKFAAYAKAYPE
LAAEFTRRVNGELPANWAAESKAFIEKLQANPASIASRKASQNAIEAYAHVLPEFLGGSADLASSNLTLWSGSKPIRAHE
NVGGNYINYGVREFGMSAIMNGIALHGGFIPYGATFLMFYEYAHNAVRMAALMKQRTLFVYTHDSIGLGEDGPTHQPVEQ
TTSLRLIPNLETWRPCDQVESAIAWQQAVERQDGPSALIFTRQNLAQMDRTSAQLEAVKRGAYVLKDCEGTPELIFIATG
SEVELALKAADVLTAEGKKVRVVSMPSTNRFDKQDAAYRESVLPAAVTKRVAIEAGIADFWYKYVGFEGRVVGMNSFGES
APADQLFKLFGFTVDNVVAKAKEIL

Nucleotide


Download         Length: 1998 bp        

>NTDB_id=298375 ERO09_RS01630 WP_128786921.1 347064..349061(+) (recP/tkt) [Haemophilus parainfluenzae strain LC_1315_18]
ATGGCAACTCGTAGACAACTCGCCAACGCAATTCGTGCGCTATCAATGGATGCAGTACAAAAAGCAAAATCAGGCCACCC
AGGCGCACCAATGGGAATGGCGGATATCGCTGAGGTATTATGGCGCGATTTCTTAAAACACAATCCAAACAACCCTAAAT
GGGCTGATCGCGACCGTTTTGTGCTTTCTAACGGTCACGGGTCAATGTTGATTTATAGCTTATTACATTTAACAGGCTAC
GATCTTTCTATCGAAGATTTAAAACAATTCCGTCAATTACATTCTAAAACCCCGGGTCACCCAGAATATGGTTATGCGCC
AGGTGTTGAAACCACAACAGGTCCGTTAGGTCAAGGTATCACCAATGCAGTAGGGATGGCGATTGCAGAGAAAACCTTAG
CGGGTCAATTTAACCGTAAAGGCCATGAAATCGTAGACCACCACACTTATGTGTTCTTAGGCGATGGCTGTTTAATGGAA
GGGATTTCTCATGAAGCTTGCTCTTTAGCAGGCACATTAGGTCTTGGTAAATTAATCGCATTCTACGATGACAACAACAT
TTCGATTGATGGTCATGTAGATGGTTGGTTCAGCGATGATACCGCAGCTCGTTTTGAAGCTTATGGCTGGCAAGTAATCC
GTAATGTAGATGGTCATGATGCAGAACAAATTCGCGCTGCAACCATTCTTGCTCAAGCAGAAAAAGAAAAACCAACATTA
ATTATTTGTAAAACCATTATCGGTTTTGGTTCACCAAATAAATCAGGTTCTCATGATTGTCACGGTGCACCATTAGGTGA
TGAAGAAATCGCATTAACTCGTAAAGCACTAGGCTGGGAATATGGTCCATTTGAAATTCCAGCTGAGTACTATGCTGAAT
GGTCTGCGAAAGAAAAAGGCGCTGCAGCAGAAAAATCTTGGGAAGAAAAATTTGCGGCTTATGCAAAAGCATACCCTGAA
CTTGCAGCAGAATTTACACGTCGTGTAAACGGTGAATTACCAGCAAATTGGGCGGCAGAATCTAAAGCGTTCATTGAAAA
ATTACAAGCTAACCCTGCAAGCATTGCGAGCCGTAAAGCATCACAAAATGCAATCGAAGCTTATGCACATGTATTACCTG
AATTCTTAGGTGGCTCTGCAGACTTAGCAAGCTCTAACTTAACGTTATGGAGCGGTTCTAAACCAATTCGTGCACACGAA
AACGTAGGCGGTAACTATATCAACTATGGTGTACGTGAGTTCGGTATGTCAGCGATTATGAATGGTATTGCTTTACACGG
CGGGTTCATTCCTTATGGCGCAACCTTCTTAATGTTCTACGAATATGCACATAATGCGGTGCGTATGGCGGCATTAATGA
AACAACGCACTTTATTCGTTTATACTCATGACTCGATCGGTTTAGGCGAAGATGGTCCAACTCACCAACCAGTGGAGCAA
ACCACATCATTACGCTTAATTCCAAATCTTGAAACATGGCGTCCATGTGACCAAGTAGAGTCAGCTATTGCATGGCAGCA
AGCGGTTGAGCGTCAAGATGGCCCAAGTGCGTTGATCTTTACCCGTCAAAACTTAGCACAAATGGACCGCACTTCTGCAC
AATTAGAGGCAGTTAAACGTGGTGCTTATGTGTTAAAAGACTGTGAGGGTACACCAGAGTTAATCTTCATTGCGACAGGT
TCTGAAGTGGAATTAGCATTGAAAGCAGCAGATGTATTGACTGCTGAAGGTAAAAAAGTACGTGTCGTTTCTATGCCAAG
CACTAACCGTTTCGATAAACAAGATGCAGCGTACCGTGAAAGTGTGTTACCTGCGGCCGTAACCAAACGTGTTGCAATCG
AAGCAGGTATTGCAGACTTCTGGTATAAATACGTCGGCTTTGAGGGTCGCGTGGTAGGTATGAATAGCTTCGGCGAATCA
GCACCAGCAGATCAATTATTCAAACTCTTTGGTTTCACCGTGGATAACGTGGTGGCAAAAGCAAAAGAGATTTTATAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(544-657)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(4-334)

Transketolase, pyrimidine binding domain (Transket_pyr)

(354-526)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

48.489

99.549

0.483

Multiple sequence alignment