Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   A7J09_RS08395 Genome accession   NZ_CP030015
Coordinates   1739982..1741064 (-) Length   360 a.a.
NCBI ID   WP_029178838.1    Uniprot ID   -
Organism   Streptococcus suis strain ISU2812     
Function   processing of CSP (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1734888..1745258 1739982..1741064 within 0


Gene organization within MGE regions


Location: 1734888..1745258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7J09_RS08375 (A7J09_08540) - 1734888..1735841 (+) 954 WP_024376800.1 IS30 family transposase -
  A7J09_RS08380 (A7J09_08545) - 1735950..1737101 (+) 1152 WP_024382206.1 ROK family transcriptional regulator -
  A7J09_RS08385 (A7J09_08550) - 1737549..1738613 (+) 1065 Protein_1627 IS110 family transposase -
  A7J09_RS08390 (A7J09_08555) - 1738737..1739992 (+) 1256 WP_172411187.1 ISL3 family transposase -
  A7J09_RS08395 (A7J09_08560) sepM 1739982..1741064 (-) 1083 WP_029178838.1 SepM family pheromone-processing serine protease Regulator
  A7J09_RS08400 (A7J09_08565) coaD 1741051..1741539 (-) 489 WP_029178839.1 pantetheine-phosphate adenylyltransferase -
  A7J09_RS08405 (A7J09_08570) rsmD 1741529..1742068 (-) 540 WP_029178840.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  A7J09_RS08410 (A7J09_08575) - 1742378..1743094 (-) 717 WP_029178841.1 hypothetical protein -
  A7J09_RS08415 (A7J09_08580) - 1743151..1743537 (-) 387 WP_029178842.1 rhodanese-like domain-containing protein -
  A7J09_RS08420 (A7J09_08585) - 1743537..1743755 (-) 219 WP_029178843.1 YqgQ family protein -
  A7J09_RS08425 (A7J09_08590) - 1743980..1745258 (-) 1279 Protein_1635 IS4 family transposase -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 38831.05 Da        Isoelectric Point: 4.7301

>NTDB_id=298273 A7J09_RS08395 WP_029178838.1 1739982..1741064(-) (sepM) [Streptococcus suis strain ISU2812]
MKKNRKLTLIASIVLGTLLIWFAVFVRLPYYLESPGGAADIRQVLTVNNQIDQEDGSYNFTYVSVQQATALQLFAAQFDP
YTTVRSSEEMTGGADNEEYFRIAQFYMETSQNMAKYQGLTLAGKEVNLDFFGVYVLALADDSTFKKVLNIADTVVSINGK
TFESSPDLIKYVSGLELGSDVTVGYISAGQEKSADGKIIKLSNGKNGIGITLVDHTEVQSSIPIDFQTGDIGGPSAGLMF
TLAIYTQLAEPDLRDGRIIAGTGTIEQDGKVGDIGGADKKVISAAKSGASIFFVPNNPVDVEVLKKNPKAKTNYEEAKEA
AEKAGLDIEVVPVKTVQEAIDYLKKTGSLSTVVGRRKANT

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=298273 A7J09_RS08395 WP_029178838.1 1739982..1741064(-) (sepM) [Streptococcus suis strain ISU2812]
ATGAAGAAAAATAGGAAGTTAACCTTAATTGCATCTATTGTTTTAGGAACTCTTTTGATTTGGTTTGCCGTTTTTGTTCG
TCTGCCTTATTATTTGGAAAGTCCAGGTGGAGCTGCCGATATTCGTCAGGTACTAACGGTGAACAATCAAATAGACCAAG
AGGATGGCTCTTACAACTTCACCTATGTATCAGTCCAACAAGCTACAGCTTTACAACTATTCGCTGCTCAGTTTGATCCC
TATACGACAGTTCGTTCCTCTGAAGAGATGACAGGAGGGGCCGACAATGAAGAGTATTTTCGTATAGCACAGTTTTACAT
GGAGACATCGCAAAATATGGCGAAGTACCAAGGTTTGACCTTAGCAGGAAAAGAAGTCAATCTTGATTTCTTTGGTGTCT
ATGTACTTGCCCTGGCGGATGATTCGACCTTTAAAAAAGTTCTTAATATTGCCGACACTGTTGTGAGTATCAATGGAAAA
ACATTTGAGTCTTCTCCTGATTTGATAAAATATGTGAGTGGCTTGGAACTTGGAAGTGATGTAACAGTTGGTTATATTAG
CGCTGGTCAGGAAAAATCTGCGGATGGAAAAATTATCAAATTGTCTAATGGCAAAAATGGGATAGGTATCACTCTCGTAG
ATCATACAGAGGTTCAAAGTTCGATTCCGATTGATTTCCAAACAGGAGATATTGGTGGTCCAAGTGCTGGTCTGATGTTT
ACACTTGCCATCTATACTCAACTCGCAGAGCCTGACTTACGTGATGGTCGGATTATTGCTGGTACGGGGACTATCGAGCA
GGATGGAAAAGTAGGTGACATTGGTGGGGCTGATAAGAAGGTCATTTCGGCAGCTAAGTCTGGTGCAAGTATCTTTTTTG
TACCAAACAATCCAGTTGATGTAGAAGTTTTGAAGAAAAACCCAAAGGCTAAAACGAACTATGAAGAAGCTAAGGAAGCA
GCCGAGAAAGCAGGTCTAGATATTGAGGTAGTTCCTGTGAAAACTGTTCAAGAGGCTATTGATTATTTGAAGAAAACAGG
CTCTTTGTCAACTGTAGTGGGTAGACGAAAAGCTAACACCTAG

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(132-195)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

61.383

96.389

0.592

Multiple sequence alignment