Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   A7J09_RS02310 Genome accession   NZ_CP030015
Coordinates   463435..464805 (+) Length   456 a.a.
NCBI ID   WP_148124295.1    Uniprot ID   -
Organism   Streptococcus suis strain ISU2812     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 458435..469805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7J09_RS02290 (A7J09_02320) - 458852..460558 (+) 1707 WP_029178569.1 ABC transporter ATP-binding protein -
  A7J09_RS02295 (A7J09_02325) - 460559..462343 (+) 1785 WP_024394879.1 ABC transporter ATP-binding protein -
  A7J09_RS02300 (A7J09_02330) - 462445..462888 (+) 444 WP_029178568.1 dUTP diphosphatase -
  A7J09_RS02305 (A7J09_02335) - 462895..463428 (+) 534 WP_029178567.1 histidine phosphatase family protein -
  A7J09_RS02310 (A7J09_02340) radA 463435..464805 (+) 1371 WP_148124295.1 DNA repair protein RadA Machinery gene
  A7J09_RS02315 (A7J09_02345) - 464926..465420 (+) 495 WP_013730632.1 beta-class carbonic anhydrase -
  A7J09_RS02320 (A7J09_02350) - 465628..466386 (+) 759 WP_013730631.1 TIGR00266 family protein -
  A7J09_RS02325 (A7J09_02355) - 466564..467010 (+) 447 WP_013730630.1 LytTR family DNA-binding domain-containing protein -
  A7J09_RS02330 (A7J09_02360) - 467015..467674 (+) 660 WP_029174718.1 LiaF transmembrane domain-containing protein -
  A7J09_RS02335 (A7J09_02365) - 467761..469041 (+) 1281 WP_029174717.1 MFS transporter -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49998.57 Da        Isoelectric Point: 6.1911

>NTDB_id=298254 A7J09_RS02310 WP_148124295.1 463435..464805(+) (radA) [Streptococcus suis strain ISU2812]
MIIAKKKITFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEAKNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVISVTTIGEVLQKVFNL

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=298254 A7J09_RS02310 WP_148124295.1 463435..464805(+) (radA) [Streptococcus suis strain ISU2812]
ATCATCATCGCTAAGAAAAAAATAACCTTTGTCTGTCAATCCTGCGAATACCACTCGCCCAAGTATCTGGGCCGTTGCCC
CAACTGTGGCTCCTGGTCTAGCTTTGTCGAGGAAGTGGAAGTCGCTGAAGCTAAGAACGAGCGGGTCAGCCTGACAGGTG
AGAAGACCCGTCCGATGAAGCTCAATGAAGTATCGTCCATTCAAGTGGCTCGCACTAAGACCAACATGGAAGAGTTCAAC
CGTGTCCTCGGTGGCGGCGTGGTGCCGGGCAGTCTGGTCCTGATTGGAGGCGATCCAGGGATTGGCAAGTCCACCTTGCT
CCTGCAAGTATCCACTCAGCTGTCCACCATTGGCACCGTCCTATATGTGTCGGGGGAAGAGTCTGCCCAGCAGATTAAGC
TCCGTGCCGAGCGTTTGGGCGACATCGACAGCGAGTTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACTGAG
ATTGAGAAAATCAAGCCAGATTTCCTGATTATCGACTCTATCCAGACCATTATGAGCCCTGACATTTCTAGCGTGCAAGG
TTCTGTCAGTCAGGTCCGTGAAGTGACCAATGAGCTTATGCAGATTGCCAAGACCAACAATATCGCAACCTTTATCGTCG
GCCACATGACCAAGGAAGGCACCCTGGCTGGACCGCGGACCTTGGAGCACATGGTAGACACCGTTCTCTATTTTGAGGGC
GAGCGTCAACACACCTTCCGTATCTTGAGGGCGGTCAAAAATCGCTTTGGCTCCACCAACGAAATCGGTATTTTTGAAAT
GCAGTCGCAGGGCTTGGTCGAAGTTCTCAATCCAAGTGAGGTCTTTCTGGAAGAGCGTCTGGACGGAGCGACTGGCTCGG
CTATTGTCGTGACCATGGAGGGCACCCGCCCTATCCTTGCCGAAGTGCAGGCTCTGGTGACCCCGACCATGTTTGGCAAT
GCCAAGCGGACCACGACAGGCTTGGATTTCAACCGTGCCAGCTTGATTATGGCGGTTTTGGAAAAACGGGCCGGTCTGCT
CCTCCAAAACCAAGATGCCTACCTTAAGTCAGCAGGCGGTGTCAAACTGGATGAGCCAGCTATTGACCTAGCGGTCGCAG
TTGCCCTTGCCTCCAGTTACAAGGACAAGCCAACCAACCCACAAGAGTGCTTTATAGGCGAGATTGGCCTGACAGGGGAA
ATCCGCCGCGTCAATCGGATTGAACAACGGATTAACGAAGCCGCCAAATTGGGCTTTACCAAGGTCTATGCCCCAAAAAA
TTCCCTGACAGGTATCAAGGTGCCCAAGGAAATCACCGTTATCAGCGTGACCACCATTGGCGAAGTCTTGCAGAAAGTAT
TCAACTTATGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

AAA domain (AAA_25)

(64-220)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

90.929

99.123

0.901
  radA Streptococcus pneumoniae D39

90.708

99.123

0.899
  radA Streptococcus pneumoniae R6

90.708

99.123

0.899
  radA Streptococcus pneumoniae Rx1

90.708

99.123

0.899
  radA Streptococcus pneumoniae TIGR4

90.708

99.123

0.899
  radA Streptococcus mitis SK321

90.487

99.123

0.897
  radA Bacillus subtilis subsp. subtilis str. 168

62.472

99.342

0.621

Multiple sequence alignment