Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   A7J09_RS01375 Genome accession   NZ_CP030015
Coordinates   266630..268423 (+) Length   597 a.a.
NCBI ID   WP_029178344.1    Uniprot ID   -
Organism   Streptococcus suis strain ISU2812     
Function   internalize XIP (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 263331..269702 266630..268423 within 0


Gene organization within MGE regions


Location: 263331..269702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7J09_RS01365 (A7J09_01375) - 263331..264586 (-) 1256 Protein_236 ISL3 family transposase -
  A7J09_RS01370 (A7J09_01380) pbp3 265174..266415 (-) 1242 WP_029174648.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  A7J09_RS01375 (A7J09_01385) oppA 266630..268423 (+) 1794 WP_029178344.1 oligopeptide ABC transporter substrate-binding protein Regulator
  A7J09_RS01380 (A7J09_01390) - 268572..269702 (+) 1131 WP_029178685.1 ISAs1 family transposase -

Sequence

Protein


Download         Length: 597 a.a.        Molecular weight: 65698.33 Da        Isoelectric Point: 4.4708

>NTDB_id=298251 A7J09_RS01375 WP_029178344.1 266630..268423(+) (oppA) [Streptococcus suis strain ISU2812]
MKKTTKLFALAGITLLSASVLAACGAKSSSSSSEQNLSFPSEVKQDGTAVADAQLKYAFVSATTSSGLLIDELTENTTDS
TFGGMVDISMFGYDGDRKLDDSGLAKAEFDVKGKKITVSLTGKDYKWSDGEPFTINDYIFTIKSMASKDYTGVRFDDRFL
NIVGMEEYVAGTASDISGIKKVDDYTVELTVKEMSPSMMYAGGDVPAYIQPEHIYKDIPVADWEKSEYSRTSKLVGMGPW
KIKEIVNGESITYVPNEYFFKGTTPKTSSLKIDIVSPDTIVSEMKAGNYDIADMPVDQLDSYKDASNLNIVGSLDSAYEY
ISFNFGKYDESAKKNVMDENAKMNDVKLRQAIAYAIDTKTAGESLYNGLYHPANSLIISFFGDIHDSELEGYSYDPEKAK
KLLEEAGYKDVDGDGIREGKDGKEFKITFAARKRTEANEALVQQYIAWWKEVGLNVELYTGRTVEGKSFYNSVQANDAAI
DMYAGGWSTGYDPNPTGLWGPIAAFNMSRFVSDENTKLLNAISSTESFDDKKNVENYKAWQKYAHEQAFAIPTFESESIT
ALNKRVKNYDSNYGSASGKGIALENIELTADKGVAAE

Nucleotide


Download         Length: 1794 bp        

>NTDB_id=298251 A7J09_RS01375 WP_029178344.1 266630..268423(+) (oppA) [Streptococcus suis strain ISU2812]
ATGAAAAAGACAACAAAACTCTTTGCCTTAGCAGGTATCACACTCTTATCTGCATCTGTTTTAGCAGCTTGTGGTGCTAA
GTCGTCATCAAGTTCATCAGAACAAAACTTGTCATTCCCATCTGAAGTAAAACAAGATGGAACAGCAGTCGCAGATGCTC
AATTGAAATATGCATTTGTTTCAGCTACAACTTCATCAGGTCTCTTGATTGACGAGTTGACTGAAAATACAACTGACTCA
ACATTTGGTGGAATGGTTGATATTTCAATGTTTGGTTACGATGGAGATCGTAAGTTAGATGATTCTGGTCTTGCTAAAGC
TGAATTTGATGTAAAAGGTAAGAAAATCACTGTTAGTTTGACAGGTAAAGATTACAAGTGGTCAGATGGTGAGCCATTTA
CAATCAATGACTACATCTTTACTATCAAGTCAATGGCAAGCAAAGACTATACAGGTGTTCGTTTTGATGATAGATTCTTG
AACATTGTGGGTATGGAAGAGTATGTTGCAGGAACAGCATCAGACATCTCTGGTATTAAGAAAGTTGACGACTACACAGT
AGAATTGACTGTAAAAGAAATGTCGCCTTCAATGATGTATGCGGGTGGTGATGTCCCAGCTTATATCCAACCAGAACATA
TCTATAAAGATATCCCTGTTGCAGACTGGGAAAAGAGCGAGTACTCACGTACATCTAAACTTGTTGGTATGGGACCTTGG
AAAATCAAGGAAATCGTAAACGGTGAGTCTATCACTTACGTACCAAACGAATACTTCTTCAAAGGTACAACGCCAAAAAC
AAGCTCATTGAAGATTGACATCGTATCTCCAGATACTATTGTTTCTGAAATGAAAGCTGGTAACTATGACATCGCAGATA
TGCCTGTTGACCAGTTGGATTCATACAAGGATGCTTCTAACTTGAATATCGTTGGTTCTTTGGACTCAGCTTATGAATAC
ATTTCATTTAATTTTGGTAAATATGACGAGTCTGCTAAGAAAAACGTCATGGATGAAAATGCTAAGATGAATGATGTGAA
ACTTCGTCAAGCAATTGCCTATGCGATTGATACTAAGACAGCTGGTGAGTCATTGTACAATGGTCTTTACCACCCTGCAA
ACTCATTGATTATCTCATTCTTCGGCGACATTCATGATTCAGAGTTGGAAGGCTATTCATACGATCCTGAAAAAGCGAAA
AAACTCTTGGAAGAAGCTGGCTACAAAGACGTAGATGGCGATGGTATCCGTGAAGGTAAAGATGGTAAAGAGTTCAAGAT
TACCTTTGCAGCTCGTAAACGTACGGAAGCAAACGAAGCACTTGTACAACAATACATTGCTTGGTGGAAAGAAGTTGGCT
TGAACGTTGAACTTTACACAGGACGTACAGTTGAAGGTAAGTCGTTCTATAACTCAGTTCAGGCTAATGATGCTGCTATT
GATATGTATGCTGGTGGATGGTCAACAGGTTACGATCCAAACCCAACAGGACTTTGGGGTCCAATCGCAGCCTTCAACAT
GTCACGTTTCGTGTCTGATGAAAATACTAAGTTGTTGAATGCAATCAGCTCAACAGAATCATTTGACGATAAGAAAAATG
TTGAGAACTATAAGGCTTGGCAAAAATATGCTCACGAGCAAGCATTTGCTATTCCAACATTTGAATCTGAGTCAATCACA
GCCCTTAACAAACGTGTGAAAAACTATGATTCTAACTATGGTTCAGCTTCAGGTAAAGGTATCGCTCTTGAAAATATCGA
ACTTACAGCTGATAAAGGTGTAGCGGCAGAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(104-500)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

92.127

100

0.921

Multiple sequence alignment