Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   ERL60_RS08560 Genome accession   NZ_CP035312
Coordinates   1782254..1783681 (-) Length   475 a.a.
NCBI ID   WP_000980608.1    Uniprot ID   -
Organism   Escherichia coli strain D72     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1777254..1788681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ERL60_RS08530 (ERL60_08535) yeeZ 1777308..1778132 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  ERL60_RS08535 (ERL60_08540) yeeY 1778178..1779107 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  ERL60_RS08540 (ERL60_08545) yoeI 1779322..1779384 (+) 63 WP_010723108.1 membrane protein YoeI -
  ERL60_RS08545 (ERL60_08550) plaP 1779374..1780732 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  ERL60_RS08550 (ERL60_08555) tsuA 1780911..1781970 (+) 1060 Protein_1673 thiosulfate utilization transporter TsuA/YeeE -
  ERL60_RS08555 (ERL60_08560) tsuB 1781984..1782211 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  ERL60_RS08560 (ERL60_08565) sbcB 1782254..1783681 (-) 1428 WP_000980608.1 exodeoxyribonuclease I Machinery gene
  ERL60_RS08565 (ERL60_08570) dacD 1783890..1785056 (+) 1167 WP_001464461.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  ERL60_RS08570 (ERL60_08575) sbmC 1785175..1785648 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  ERL60_RS08575 (ERL60_08580) yeeA 1785846..1786904 (+) 1059 WP_001200891.1 FUSC family protein -
  ERL60_RS08580 (ERL60_08585) tmaR 1787076..1787405 (+) 330 WP_000450409.1 DUF496 family protein -
  ERL60_RS08585 (ERL60_08590) - 1787506..1787949 (-) 444 WP_001542950.1 EutP/PduV family microcompartment system protein -
  ERL60_RS08590 (ERL60_08595) pduU 1787954..1788304 (-) 351 WP_000211393.1 propanediol utilization microcompartment protein PduU -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54457.75 Da        Isoelectric Point: 5.6070

>NTDB_id=298236 ERL60_RS08560 WP_000980608.1 1782254..1783681(-) (sbcB) [Escherichia coli strain D72]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=298236 ERL60_RS08560 WP_000980608.1 1782254..1783681(-) (sbcB) [Escherichia coli strain D72]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGGATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment