Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   BCERKBAB4_RS25030 Genome accession   NC_010184
Coordinates   4946121..4947470 (-) Length   449 a.a.
NCBI ID   WP_040963186.1    Uniprot ID   -
Organism   Bacillus mycoides KBAB4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4941121..4952470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCERKBAB4_RS32515 - 4943694..4943798 (-) 105 Protein_5011 YafY family transcriptional regulator -
  BCERKBAB4_RS25010 (BcerKBAB4_4983) - 4943758..4944126 (+) 369 WP_227590941.1 VOC family protein -
  BCERKBAB4_RS25015 (BcerKBAB4_4984) hpf 4944230..4944772 (-) 543 WP_002089603.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  BCERKBAB4_RS25020 (BcerKBAB4_4985) cspC 4945093..4945290 (-) 198 WP_001990088.1 cold shock protein CspC -
  BCERKBAB4_RS25025 (BcerKBAB4_4986) - 4945417..4946121 (-) 705 WP_012261985.1 ComF family protein -
  BCERKBAB4_RS25030 (BcerKBAB4_4987) comFA 4946121..4947470 (-) 1350 WP_040963186.1 ATP-dependent helicase ComFA Machinery gene
  BCERKBAB4_RS25035 (BcerKBAB4_4988) - 4947601..4948947 (-) 1347 WP_012261987.1 NlpC/P60 family protein -
  BCERKBAB4_RS25040 (BcerKBAB4_4989) - 4949219..4949533 (-) 315 WP_002089608.1 winged helix-turn-helix transcriptional regulator -
  BCERKBAB4_RS25045 (BcerKBAB4_4990) - 4949696..4950538 (-) 843 WP_002016143.1 DegV family protein -
  BCERKBAB4_RS25050 (BcerKBAB4_4991) - 4950930..4951565 (+) 636 WP_012261988.1 YigZ family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 50843.16 Da        Isoelectric Point: 9.2544

>NTDB_id=29814 BCERKBAB4_RS25030 WP_040963186.1 4946121..4947470(-) (comFA) [Bacillus mycoides KBAB4]
MLAGRQLLLEELSSDLQNKLDHLKRNRDVVCVQGVIKKSSKYMCQRCGNIEQRLFVSLLCKRCNEVCTYCRKCITMGRVS
ECTVLVRGIAEISGESYLNPLQWEGVLSDGQELAAQSVVDAVKQKESFFIWAVCGAGKTEMLFRGIAEALQKGERVCIAT
PRTDVVLELAPRLQEVFPNINVAALYGGSLDREKDAALIVATTHQLLRYYRAFHVMIVDEIDAFPYHADEMLQYAVSEAM
KEKAARIYLTATPDEKWKRKLQSGKQKGVIISGRYHRHPLPVPIFRWCGNWKKGLIRKKIPRALLQWLNLYLSKRYPIFL
FVPHVRYVEEISQLLKSLNNQIDGVHAEDPARKEKVAAFRKGEIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSSDEPHGDVIYFHYGKTEAMVRAKKHIQSMNKNAKEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=29814 BCERKBAB4_RS25030 WP_040963186.1 4946121..4947470(-) (comFA) [Bacillus mycoides KBAB4]
ATGTTAGCTGGTAGACAGTTACTGTTAGAAGAACTCTCTTCAGATTTGCAGAATAAATTGGATCATCTGAAAAGGAATCG
AGACGTCGTTTGTGTACAAGGGGTAATTAAGAAGTCTTCAAAATATATGTGTCAGCGCTGCGGAAATATAGAGCAGCGAC
TATTTGTATCATTGCTATGTAAAAGGTGCAATGAAGTATGTACGTATTGCCGGAAATGTATAACGATGGGCAGGGTAAGT
GAATGTACTGTACTTGTTCGCGGGATTGCTGAAATAAGCGGAGAAAGTTATTTGAATCCGTTACAGTGGGAAGGCGTTTT
GTCTGACGGTCAGGAGTTAGCTGCGCAAAGTGTCGTTGACGCTGTTAAGCAGAAAGAATCATTTTTTATTTGGGCAGTGT
GCGGGGCTGGAAAAACAGAAATGTTGTTTCGCGGAATTGCAGAGGCACTACAAAAGGGAGAAAGAGTTTGTATTGCAACG
CCGAGAACGGACGTTGTACTTGAATTAGCACCAAGATTACAAGAAGTGTTTCCAAATATAAATGTAGCTGCTTTATACGG
AGGGAGTTTAGACCGAGAAAAAGATGCGGCGTTAATCGTTGCAACTACACATCAATTGTTACGTTATTATAGGGCGTTCC
ATGTCATGATTGTAGATGAGATAGATGCTTTTCCGTATCATGCAGATGAGATGTTGCAGTATGCAGTAAGCGAAGCGATG
AAAGAGAAGGCAGCACGTATTTATTTAACTGCAACTCCAGATGAAAAGTGGAAGCGTAAGTTGCAAAGTGGTAAGCAAAA
AGGGGTTATTATTTCAGGGCGATACCATCGTCATCCATTGCCAGTTCCGATATTTCGGTGGTGCGGAAATTGGAAAAAGG
GTCTTATACGTAAAAAAATTCCTCGTGCTTTATTACAATGGTTAAATCTGTACTTATCGAAACGATACCCCATTTTTCTA
TTTGTTCCTCATGTGCGATATGTAGAAGAAATTAGCCAGTTATTAAAATCATTAAACAATCAAATTGACGGTGTGCATGC
AGAAGATCCGGCGAGAAAAGAGAAGGTAGCAGCTTTCAGAAAAGGAGAAATCCCTTTATTAGTTACAACGACAATTTTGG
AACGAGGAGTAACTGTCAAAAATTTACAAGTTGCAGTTTTAGGAGCTGAGGAAGAAATATTTTCAGAAAGTGCTCTCGTT
CAAATTGCAGGGCGTGCTGGTAGAAGCTCTGATGAACCGCATGGAGATGTTATCTATTTTCATTATGGAAAGACAGAGGC
GATGGTGCGTGCGAAAAAACATATTCAAAGTATGAATAAGAATGCTAAAGAACAAGGACTGATAGATTGA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(313-409)

Type III restriction enzyme, res subunit (ResIII)

(107-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

50.567

98.218

0.497
  comFA Latilactobacillus sakei subsp. sakei 23K

41.206

88.641

0.365

Multiple sequence alignment